Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9026 122 6e-23 seq926 122 6e-23 seq206 122 6e-23 seq7054 109 4e-19 seq6013 109 4e-19 seq1017 109 4e-19 seq1777 102 5e-17 seq17746 100 2e-16 seq982 96.9 2e-15 seq10032 89.7 3e-13 seq2783 89.7 3e-13 seq1812 87.8 1e-12 seq784 87.8 1e-12 seq1930 86.0 4e-12 seq101 86.0 4e-12 seq1667 84.2 1e-11 seq1193 84.2 1e-11 >seq9026 Length=3182 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 173 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 114 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 113 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 79 >seq926 Length=201871 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 37517 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 37458 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 37457 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 37423 >seq206 Length=388919 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 147621 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 147562 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 147561 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 147527 >seq7054 Length=8061 Score = 109 bits (120), Expect = 4e-19 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 55 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 114 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| ||||||||||||| || Sbjct 115 TAATCCATTCATGCGCGTCAGTA 137 >seq6013 Length=13913 Score = 109 bits (120), Expect = 4e-19 Identities = 72/80 (90%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 119 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 120 TAATCCATTCATGCGCGTCA 139 >seq1017 Length=190417 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| ||||||||||||||||| |||||||||||||| ||| | || |||||||| Sbjct 125081 AAGCCTGTTCCCTTGGCTGTGGTCTCGCTAGATAGTAGTTAGAGACAGCGGAAATCTCGT 125140 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 125141 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 125175 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 127159 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 127218 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 127219 GTCTATATTTAGCCTTA 127235 >seq1777 Length=122891 Score = 102 bits (112), Expect = 5e-17 Identities = 74/86 (86%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| Sbjct 99050 AAGCCCGTTCCCTTGGCTGAGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 99109 Query 25957 TAATCCTTTCATGCGCGTCACTAATT 25982 |||| | ||||||||||||| | ||| Sbjct 99110 TAATTCATTCATGCGCGTCAGTTATT 99135 >seq17746 Length=663 Score = 100 bits (110), Expect = 2e-16 Identities = 70/80 (88%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| || | || |||||||| Sbjct 446 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTCAGTGACAGTGGGAATCTCGT 505 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 506 TAATCCATTCATGCGCGTCA 525 >seq982 Length=194932 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/83 (86%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||| |||||||| |||||||||||||||||| ||| | || |||||||| Sbjct 155268 AAGCCCGTTCGCTTGGCTGCGGTTTCGCTAGATAGTAGGTAGAGAGTGTGGGAATCTCGT 155327 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||||||| ||||||||| || Sbjct 155328 TAATCCTTTCGTGCGCGTCAGTA 155350 >seq10032 Length=2126 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 991 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 932 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| ||||| Sbjct 931 GTCTATATTTAACCTTA 915 >seq2783 Length=75324 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 7595 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 7654 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| ||||| Sbjct 7655 GTCTATATTTAACCTTA 7671 >seq1812 Length=120937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/81 (84%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||||||||||||| || | ||||||||||| ||||| || ||||||| Sbjct 44168 TAAGCCCGTTCCCTTGGCTGTAGTCTTGCTAGATAGTAATTAGGGATAGTGGGAATCTCG 44227 Query 25956 TTAATCCTTTCATGCGCGTCA 25976 ||||||| || |||||||||| Sbjct 44228 TTAATCCATTTATGCGCGTCA 44248 >seq784 Length=224811 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||| Sbjct 209697 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGA 209756 Query 20007 GGTAATATTTAGCCTTAT 20024 | ||||||| |||||| Sbjct 209757 GTCTATATTTACCCTTAT 209774 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||| Sbjct 216913 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGA 216854 Query 20007 GGTAATATTTAGCCTTAT 20024 | ||||||| |||||| Sbjct 216853 GTCTATATTTACCCTTAT 216836 >seq1930 Length=114119 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 49205 CTCGCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAGTTCGC 49264 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| ||||| Sbjct 49265 GTCTATATTTAACCTTA 49281 >seq101 Length=495878 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| || | ||||||||| ||||||| |||| Sbjct 15033 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCGCAGTACTTGTTTGCTATCGAATTCGC 15092 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 15093 GTCTATATTTAGCGTTA 15109 >seq1667 Length=130740 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| |||||||| |||||| |||| Sbjct 17366 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAATACTTGTTTGCTATCAAATTCGC 17425 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 17426 GTCTATATTTAGCCTT 17441 >seq1193 Length=173371 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 |||||||| || || || |||||||| | |||| |||||| |||||| ||| || | Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 ||||| |||| || || || ||||| || | ||| || || || || ||||| Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 38298 GTTTTCACGAATATCTGCATG 38318 ||||||||||| || |||||| Sbjct 29642 GTTTTCACGAAGATTTGCATG 29622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334850668949657