Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq9026 122 6e-23
seq926 122 6e-23
seq206 122 6e-23
seq7054 109 4e-19
seq6013 109 4e-19
seq1017 109 4e-19
seq1777 102 5e-17
seq17746 100 2e-16
seq982 96.9 2e-15
seq10032 89.7 3e-13
seq2783 89.7 3e-13
seq1812 87.8 1e-12
seq784 87.8 1e-12
seq1930 86.0 4e-12
seq101 86.0 4e-12
seq1667 84.2 1e-11
seq1193 84.2 1e-11
>seq9026
Length=3182
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 173 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 114
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||| || |||| ||||||
Sbjct 113 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 79
>seq926
Length=201871
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 37517 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 37458
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||| || |||| ||||||
Sbjct 37457 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 37423
>seq206
Length=388919
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 147621 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 147562
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||| || |||| ||||||
Sbjct 147561 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 147527
>seq7054
Length=8061
Score = 109 bits (120), Expect = 4e-19
Identities = 74/83 (89%), Gaps = 5/83 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 55 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 114
Query 25957 TAATCCTTTCATGCGCGTCACTA 25979
|||||| ||||||||||||| ||
Sbjct 115 TAATCCATTCATGCGCGTCAGTA 137
>seq6013
Length=13913
Score = 109 bits (120), Expect = 4e-19
Identities = 72/80 (90%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 119
Query 25957 TAATCCTTTCATGCGCGTCA 25976
|||||| |||||||||||||
Sbjct 120 TAATCCATTCATGCGCGTCA 139
>seq1017
Length=190417
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
||||| ||||||||||||||||| |||||||||||||| ||| | || ||||||||
Sbjct 125081 AAGCCTGTTCCCTTGGCTGTGGTCTCGCTAGATAGTAGTTAGAGACAGCGGAAATCTCGT 125140
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||| || |||| ||||||
Sbjct 125141 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 125175
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||
Sbjct 127159 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 127218
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 127219 GTCTATATTTAGCCTTA 127235
>seq1777
Length=122891
Score = 102 bits (112), Expect = 5e-17
Identities = 74/86 (86%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||
Sbjct 99050 AAGCCCGTTCCCTTGGCTGAGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 99109
Query 25957 TAATCCTTTCATGCGCGTCACTAATT 25982
|||| | ||||||||||||| | |||
Sbjct 99110 TAATTCATTCATGCGCGTCAGTTATT 99135
>seq17746
Length=663
Score = 100 bits (110), Expect = 2e-16
Identities = 70/80 (88%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| || | || ||||||||
Sbjct 446 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTCAGTGACAGTGGGAATCTCGT 505
Query 25957 TAATCCTTTCATGCGCGTCA 25976
|||||| |||||||||||||
Sbjct 506 TAATCCATTCATGCGCGTCA 525
>seq982
Length=194932
Score = 96.9 bits (106), Expect = 2e-15
Identities = 71/83 (86%), Gaps = 5/83 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
|||||||||| |||||||| |||||||||||||||||| ||| | || ||||||||
Sbjct 155268 AAGCCCGTTCGCTTGGCTGCGGTTTCGCTAGATAGTAGGTAGAGAGTGTGGGAATCTCGT 155327
Query 25957 TAATCCTTTCATGCGCGTCACTA 25979
|||||||||| ||||||||| ||
Sbjct 155328 TAATCCTTTCGTGCGCGTCAGTA 155350
>seq10032
Length=2126
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||
Sbjct 991 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 932
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||| |||||
Sbjct 931 GTCTATATTTAACCTTA 915
>seq2783
Length=75324
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||
Sbjct 7595 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 7654
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||| |||||
Sbjct 7655 GTCTATATTTAACCTTA 7671
>seq1812
Length=120937
Score = 87.8 bits (96), Expect = 1e-12
Identities = 68/81 (84%), Gaps = 5/81 (6%)
Strand=Plus/Plus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
||||||||||||||||||||| || | ||||||||||| ||||| || |||||||
Sbjct 44168 TAAGCCCGTTCCCTTGGCTGTAGTCTTGCTAGATAGTAATTAGGGATAGTGGGAATCTCG 44227
Query 25956 TTAATCCTTTCATGCGCGTCA 25976
||||||| || ||||||||||
Sbjct 44228 TTAATCCATTTATGCGCGTCA 44248
>seq784
Length=224811
Score = 87.8 bits (96), Expect = 1e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct 209697 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGA 209756
Query 20007 GGTAATATTTAGCCTTAT 20024
| ||||||| ||||||
Sbjct 209757 GTCTATATTTACCCTTAT 209774
Score = 87.8 bits (96), Expect = 1e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct 216913 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGA 216854
Query 20007 GGTAATATTTAGCCTTAT 20024
| ||||||| ||||||
Sbjct 216853 GTCTATATTTACCCTTAT 216836
>seq1930
Length=114119
Score = 86.0 bits (94), Expect = 4e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||
Sbjct 49205 CTCGCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAGTTCGC 49264
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||| |||||
Sbjct 49265 GTCTATATTTAACCTTA 49281
>seq101
Length=495878
Score = 86.0 bits (94), Expect = 4e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| || | ||||||||| ||||||| ||||
Sbjct 15033 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCGCAGTACTTGTTTGCTATCGAATTCGC 15092
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||| |||
Sbjct 15093 GTCTATATTTAGCGTTA 15109
>seq1667
Length=130740
Score = 84.2 bits (92), Expect = 1e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| |||||||| |||||| ||||
Sbjct 17366 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAATACTTGTTTGCTATCAAATTCGC 17425
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 17426 GTCTATATTTAGCCTT 17441
>seq1193
Length=173371
Score = 84.2 bits (92), Expect = 1e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|||||||| || || || |||||||| | |||| |||||| |||||| ||| || |
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
||||| |||| || || || ||||| || | ||| || || || || |||||
Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643
Query 38298 GTTTTCACGAATATCTGCATG 38318
||||||||||| || ||||||
Sbjct 29642 GTTTTCACGAAGATTTGCATG 29622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334850668949657
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |