Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1193 95.1 1e-14 >seq1193 Length=173371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||||||| || | |||||| |||| || ||| | ||| Sbjct 29623 ATGCAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTCT 29682 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | || | ||| ||||| ||||| || || || || || Sbjct 29683 GACACGATCGAGAACGTGAAGGCGAAGATTCAG-GACAAGGAAGGCATCCCTCCAGATCA 29741 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 |||||| | ||||||||||| Sbjct 29742 ACAGCGTCTCATTTTTGCCGG 29762 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||| || || ||||| ||||||| || | |||||| | || ||||| Sbjct 29318 CGGAGGAATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGA 29377 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | |||||||| || ||| ||||| || ||| ||||||||||| || || || Sbjct 29378 AGCCTCTGACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCC 29437 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAA 25141 || || || || | |||||||| || || Sbjct 29438 AGATCAGCAACGTCTGATTTTTGCTGGTAA 29467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433203115818305