Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12137 86.0 5e-12 >seq12137 Length=1209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || || || ||||||| ||||| || || | Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || |||||||||||||||||||| ||||| || ||||| Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 1018 CAACGACTGATCTTTGCAGG 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419607035308555