Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2861 100 6e-16 seq2622 100 6e-16 seq359 100 6e-16 seq291 100 6e-16 seq51 100 6e-16 seq1602 98.7 2e-15 seq763 98.7 2e-15 seq694 98.7 2e-15 seq256 98.7 2e-15 seq3310 96.9 7e-15 seq3241 93.3 9e-14 >seq2861 Length=72955 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 24488 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 24547 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 24548 CCCCGCATCGGGC 24560 >seq2622 Length=81370 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 17327 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 17386 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 17387 CCCCGCATCGGGC 17399 >seq359 Length=321355 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 91576 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 91635 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 91636 CCCCGCATCGGGC 91648 >seq291 Length=350196 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 92699 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 92640 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 92639 CCCCGCATCGGGC 92627 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 100881 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 100822 Query 142564 CCCACATCGGG 142574 ||| ||||||| Sbjct 100821 CCCGCATCGGG 100811 >seq51 Length=604917 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 27909 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 27850 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 27849 CCCCGCATCGGGC 27837 >seq1602 Length=136581 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 211 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 152 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 151 CCCGCATCGGGC 140 >seq763 Length=228744 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 227067 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 227008 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 227007 CCCGCATCGGGC 226996 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGT-AGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||| ||||| | ||||||||||||| | |||| ||||||||| Sbjct 227452 GCCCGGTTAGCTCAGTCGGTTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 227393 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 227392 CCCCGCATCGGGC 227380 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/73 (89%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAG-TGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||| | ||||||||||||| | || ||| ||||||||| Sbjct 227260 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTTCGCGGGTTCGAG 227201 Query 142563 CCCCACATCGGGC 142575 ||| |||||||| Sbjct 227200 -CCCGCATCGGGC 227189 >seq694 Length=241167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 43996 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 43937 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 43936 CCCGCATCGGGC 43925 >seq256 Length=365969 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 255900 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 255959 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 255960 CCCGCATCGGGC 255971 >seq3310 Length=58439 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 54648 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 54707 Query 142563 CCCCACATCGGGC 142575 | || |||||||| Sbjct 54708 CTCCGCATCGGGC 54720 >seq3241 Length=60500 Score = 93.3 bits (102), Expect = 9e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 ||||| || || ||||| ||||||||||| || || || |||||||||||||| Sbjct 37011 GCTGGAACGAAGAACTCGCAGCTCTGCACTCTGATTCTTACCGAGGGAGACTCAGCCAAA 36952 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 || |||| ||||||||| ||||| || ||||| |||| || | || |||||| Sbjct 36951 ACATTGGCTGTGTCTGGTCTTGGAGTGGTTGGCCGTGATCGGTACGGAGTGTTTCCCCTC 36892 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGA 217958 | ||||||||||| ||||| || || Sbjct 36891 AGGGGTAAGCTGCTGAACGTTCGAGA 36866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027525388897127