Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2861 100 6e-16
seq2622 100 6e-16
seq359 100 6e-16
seq291 100 6e-16
seq51 100 6e-16
seq1602 98.7 2e-15
seq763 98.7 2e-15
seq694 98.7 2e-15
seq256 98.7 2e-15
seq3310 96.9 7e-15
seq3241 93.3 9e-14
>seq2861
Length=72955
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 24488 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 24547
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 24548 CCCCGCATCGGGC 24560
>seq2622
Length=81370
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 17327 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 17386
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 17387 CCCCGCATCGGGC 17399
>seq359
Length=321355
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 91576 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 91635
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 91636 CCCCGCATCGGGC 91648
>seq291
Length=350196
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 92699 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 92640
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 92639 CCCCGCATCGGGC 92627
Score = 96.9 bits (106), Expect = 7e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 100881 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 100822
Query 142564 CCCACATCGGG 142574
||| |||||||
Sbjct 100821 CCCGCATCGGG 100811
>seq51
Length=604917
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 27909 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 27850
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 27849 CCCCGCATCGGGC 27837
>seq1602
Length=136581
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 211 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 152
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 151 CCCGCATCGGGC 140
>seq763
Length=228744
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 227067 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 227008
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 227007 CCCGCATCGGGC 226996
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGT-AGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||| ||||| | ||||||||||||| | |||| |||||||||
Sbjct 227452 GCCCGGTTAGCTCAGTCGGTTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 227393
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 227392 CCCCGCATCGGGC 227380
Score = 89.7 bits (98), Expect = 1e-12
Identities = 65/73 (89%), Gaps = 2/73 (3%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAG-TGGTCGTGGGTTCGAG 142562
||||||||||||||||||||||||| | ||||||||||||| | || ||| |||||||||
Sbjct 227260 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTTCGCGGGTTCGAG 227201
Query 142563 CCCCACATCGGGC 142575
||| ||||||||
Sbjct 227200 -CCCGCATCGGGC 227189
>seq694
Length=241167
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 43996 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 43937
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 43936 CCCGCATCGGGC 43925
>seq256
Length=365969
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 255900 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 255959
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 255960 CCCGCATCGGGC 255971
>seq3310
Length=58439
Score = 96.9 bits (106), Expect = 7e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 54648 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 54707
Query 142563 CCCCACATCGGGC 142575
| || ||||||||
Sbjct 54708 CTCCGCATCGGGC 54720
>seq3241
Length=60500
Score = 93.3 bits (102), Expect = 9e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872
||||| || || ||||| ||||||||||| || || || ||||||||||||||
Sbjct 37011 GCTGGAACGAAGAACTCGCAGCTCTGCACTCTGATTCTTACCGAGGGAGACTCAGCCAAA 36952
Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932
|| |||| ||||||||| ||||| || ||||| |||| || | || ||||||
Sbjct 36951 ACATTGGCTGTGTCTGGTCTTGGAGTGGTTGGCCGTGATCGGTACGGAGTGTTTCCCCTC 36892
Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGA 217958
| ||||||||||| ||||| || ||
Sbjct 36891 AGGGGTAAGCTGCTGAACGTTCGAGA 36866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027525388897127
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |