Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 8e-14 >seq3 Length=1029188 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||| | ||| || || ||||||||||| | || ||||| ||| | || ||| Sbjct 32975 TTCACAATCTGGAAGTCACCCGACAGCACTCTTCGGCTGTAGATGTTCGAGGTGTAGGGC 33034 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 ||||| ||| ||||||| || ||||| || || ||| || |||||||||| |||| Sbjct 33035 TCGATCGACTCATTGTTGCCGAGAATCTGGGCTGTTGACGCCGTGGGCATGGGCGCCACC 33094 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCT 244236 ||||||||||| | || |||||||| Sbjct 33095 AGCAGACTGTTGCGGACACCGTGCCT 33120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944060065136720