Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1193 102 2e-16 seq12137 98.7 2e-15 seq2432 93.3 1e-13 seq405 91.5 3e-13 seq153 86.0 1e-11 >seq1193 Length=173371 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || ||||||||||| || ||||| || ||| || || ||||| || |||||||| Sbjct 32333 TTACCTGCGAAGATGAGTCGCTGCTG---GTCTGGAGGAATACCTTCCTTGTCCTGGATC 32277 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 |||||||| || || || || | |||| | ||||||||| | ||||| |||||||| Sbjct 32276 TTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCA 32217 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| ||||| || ||||| Sbjct 32216 GTCAAAGTCTTCACGAAGATTTGCAT 32191 Score = 100 bits (110), Expect = 7e-16 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || || || |||||||| || ||| ||||| ||| |||||||| |||||||| Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGA---TCTGGAGGGATGCCTTCTTTGTCCTGGATC 29411 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| ||||| || || || | || | ||| || || || ||||||||||| ||| Sbjct 29410 TTCGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCG 29351 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || |||||| Sbjct 29350 GTCAGTGTCTTCACGAAGATTTGCATT 29324 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||||||| ||||| ||| ||||| || ||||| || ||| Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGA---TCTGGAGGGATGCCTTCCTTGTCCTGAATCTTC 29706 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | || | || || ||||| ||||||||||| |||||| Sbjct 29705 GCCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTC 29646 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| || ||||| Sbjct 29645 AACGTTTTCACGAAGATTTGCAT 29623 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||| ||||| || | || ||| |||||||||||| || || ||||| ||| Sbjct 31066 TTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 31007 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | || | || || || | ||||| |||||||| ||| Sbjct 31006 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 30947 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || |||||| Sbjct 30946 AGTGTCTTCACGAAGATTTGCATT 30923 >seq12137 Length=1209 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 ||||| || | || || ||||||| ||||||||| |||||| || ||||| || Sbjct 679 TCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGA---TCTGGGGGAATCCCTTCCTTG 735 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || ||||| || || || ||||| || || | |||| | ||| || || | ||||| Sbjct 736 TCTTGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATT 795 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||| ||||||||||||||| Sbjct 796 GTCTTTCCAGTAAGAGTCTTTACGAATATCTGCATT 831 >seq2432 Length=89687 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| ||||| || ||||||| || || || || |||||||| || Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTG---ATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTG 4559 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || |||| || | ||| || || || ||||| |||||||| || Sbjct 4560 GCCTTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTG 4619 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| Sbjct 4620 AGCGTCTTTACGAAGATCTGCAT 4642 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/154 (75%), Gaps = 11/154 (7%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGG 288384 || || ||||||||||||| |||||||| ||||||| || ||||| || || ||| Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTG---ATCTGGGGGAATCCCTTCCTTGTCTTGG 4854 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTC-GATT--CTA-CTTCGAGCGTGATCGT 288440 || || || || ||||| || || | |||| | | || | | || | |||||||| || Sbjct 4855 ATCTTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGT 4914 Query 288441 CTTCCCGGTCA-GAGTCTTGACGAATATCTGCAT 288473 ||| || || | ||||||| ||||| |||||||| Sbjct 4915 CTTTCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| ||||| || ||| ||||||||||| || || || || || Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTG---GTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTG 8450 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||| || || || ||||| || || |||||||| || Sbjct 8451 GCTTTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTT 8510 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| || |||||| Sbjct 8511 AGCGTTTTAACGAAGATTTGCATT 8534 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| |||| |||||| ||| | || || || ||||| || ||||| || Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | || | ||| || || || ||||| |||||||| || Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||||||| Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464 >seq405 Length=308142 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||| |||||||| |||||||| ||||| || || || || |||||||| || Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGG---TCTGGAGGAATCCCCTCCTTGTCCTGGATCTTG 21308 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| || || || | || | ||| || ||||| ||||||||||| || || Sbjct 21307 GCCTTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTG 21248 Query 288451 AGAGTCTTGACGAATATCTGCATTA 288475 |||||||| ||||| || ||||||| Sbjct 21247 AGAGTCTTCACGAAGATTTGCATTA 21223 >seq153 Length=425603 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/183 (70%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || ||||||| || | ||||| ||||| | || ||||||||||| || ||| Sbjct 197687 ATGTTGTAGTCGGAAAGAATACGTCCATCTTCAAGCTG----CCTGCGAAGATGAGTCGC 197742 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || ||| || | ||||| || ||||| || |||||||| || || || || | | Sbjct 197743 TGCTGACCTGGAGGAACGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTA 197802 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || | | ||||||| | ||||| |||||| | |||| ||||| ||||| ||||| Sbjct 197803 TCAGAGGCTCCTACTTCCAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGA 197862 Query 288472 ATT 288474 ||| Sbjct 197863 ATT 197865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179296991627666