Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 102 2e-16
seq12137 98.7 2e-15
seq2432 93.3 1e-13
seq405 91.5 3e-13
seq153 86.0 1e-11
>seq1193
Length=173371
Score = 102 bits (112), Expect = 2e-16
Identities = 111/146 (76%), Gaps = 6/146 (4%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387
|| ||||||||||| || ||||| || ||| || || ||||| || ||||||||
Sbjct 32333 TTACCTGCGAAGATGAGTCGCTGCTG---GTCTGGAGGAATACCTTCCTTGTCCTGGATC 32277
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
|||||||| || || || || | |||| | ||||||||| | ||||| ||||||||
Sbjct 32276 TTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCA 32217
Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473
|||| |||||| ||||| || |||||
Sbjct 32216 GTCAAAGTCTTCACGAAGATTTGCAT 32191
Score = 100 bits (110), Expect = 7e-16
Identities = 111/147 (76%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387
|| || || || |||||||| || ||| ||||| ||| |||||||| ||||||||
Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGA---TCTGGAGGGATGCCTTCTTTGTCCTGGATC 29411
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
||||| ||||| || || || | || | ||| || || || ||||||||||| |||
Sbjct 29410 TTCGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCG 29351
Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||| || ||||||
Sbjct 29350 GTCAGTGTCTTCACGAAGATTTGCATT 29324
Score = 87.8 bits (96), Expect = 4e-12
Identities = 106/143 (74%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||||||| ||||| ||| ||||| || ||||| || |||
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGA---TCTGGAGGGATGCCTTCCTTGTCCTGAATCTTC 29706
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| |||||||| || || | || | || || ||||| ||||||||||| ||||||
Sbjct 29705 GCCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTC 29646
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| || || ||||| || |||||
Sbjct 29645 AACGTTTTCACGAAGATTTGCAT 29623
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| ||||| ||||| || | || ||| |||||||||||| || || ||||| |||
Sbjct 31066 TTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 31007
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| |||||||| || || | || | || || || | ||||| |||||||| |||
Sbjct 31006 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 30947
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| ||||| || ||||||
Sbjct 30946 AGTGTCTTCACGAAGATTTGCATT 30923
>seq12137
Length=1209
Score = 98.7 bits (108), Expect = 2e-15
Identities = 116/156 (74%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
||||| || | || || ||||||| ||||||||| |||||| || ||||| ||
Sbjct 679 TCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGA---TCTGGGGGAATCCCTTCCTTG 735
Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438
|| ||||| || || || ||||| || || | |||| | ||| || || | |||||
Sbjct 736 TCTTGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATT 795
Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| || || |||||||| |||||||||||||||
Sbjct 796 GTCTTTCCAGTAAGAGTCTTTACGAATATCTGCATT 831
>seq2432
Length=89687
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|||||||||||||| ||||| || ||||||| || || || || |||||||| ||
Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTG---ATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTG 4559
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || || || || |||| || | ||| || || || ||||| |||||||| ||
Sbjct 4560 GCCTTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTG 4619
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||||||
Sbjct 4620 AGCGTCTTTACGAAGATCTGCAT 4642
Score = 86.0 bits (94), Expect = 1e-11
Identities = 115/154 (75%), Gaps = 11/154 (7%)
Strand=Plus/Plus
Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGG 288384
|| || ||||||||||||| |||||||| ||||||| || ||||| || || |||
Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTG---ATCTGGGGGAATCCCTTCCTTGTCTTGG 4854
Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTC-GATT--CTA-CTTCGAGCGTGATCGT 288440
|| || || || ||||| || || | |||| | | || | | || | |||||||| ||
Sbjct 4855 ATCTTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGT 4914
Query 288441 CTTCCCGGTCA-GAGTCTTGACGAATATCTGCAT 288473
||| || || | ||||||| ||||| ||||||||
Sbjct 4915 CTTTCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390
|||||||||||||| ||||| || ||| ||||||||||| || || || || ||
Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTG---GTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTG 8450
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || || || || | ||| || || || ||||| || || |||||||| ||
Sbjct 8451 GCTTTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTT 8510
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| || || ||||| || ||||||
Sbjct 8511 AGCGTTTTAACGAAGATTTGCATT 8534
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || ||||| |||| |||||| ||| | || || || ||||| || ||||| ||
Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || || || || || | || | ||| || || || ||||| |||||||| ||
Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| |||||||||||||||
Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464
>seq405
Length=308142
Score = 91.5 bits (100), Expect = 3e-13
Identities = 108/145 (74%), Gaps = 6/145 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
||||| |||||||| |||||||| ||||| || || || || |||||||| ||
Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGG---TCTGGAGGAATCCCCTCCTTGTCCTGGATCTTG 21308
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| ||||| || || || | || | ||| || ||||| ||||||||||| || ||
Sbjct 21307 GCCTTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTG 21248
Query 288451 AGAGTCTTGACGAATATCTGCATTA 288475
|||||||| ||||| || |||||||
Sbjct 21247 AGAGTCTTCACGAAGATTTGCATTA 21223
>seq153
Length=425603
Score = 86.0 bits (94), Expect = 1e-11
Identities = 129/183 (70%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351
|| || ||||||| || | ||||| ||||| | || ||||||||||| || |||
Sbjct 197687 ATGTTGTAGTCGGAAAGAATACGTCCATCTTCAAGCTG----CCTGCGAAGATGAGTCGC 197742
Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411
|| ||| || | ||||| || ||||| || |||||||| || || || || | |
Sbjct 197743 TGCTGACCTGGAGGAACGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTA 197802
Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471
|| | | ||||||| | ||||| |||||| | |||| ||||| ||||| |||||
Sbjct 197803 TCAGAGGCTCCTACTTCCAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGA 197862
Query 288472 ATT 288474
|||
Sbjct 197863 ATT 197865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179296991627666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |