Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1193 86.0 7e-12 seq1 86.0 7e-12 >seq1193 Length=173371 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42068 ACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG 42127 ||| ||||| ||||||||||||||||| | || | || ||||||||| ||| || Sbjct 29170 ACCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGC 29111 Query 42128 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 || | || | | ||||||| | ||| || || | |||||||| || || || || Sbjct 29110 CTTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAG 29051 Query 42188 CGTCTTTACAAAGATTTGCATT 42209 |||||| |||||||| |||||| Sbjct 29050 CGTCTTCACAAAGATCTGCATT 29029 >seq1 Length=1245440 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| || |||| |||| | ||| |||||| |||||| | ||||||||||| | Sbjct 738481 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 738539 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||| Sbjct 738540 TACTCACCACTATACTACCGAGGA 738563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | ||| |||||| |||||| | ||||||||||| ||||||||||| Sbjct 762245 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 762186 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 762185 TATACTACCGAGGA 762172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543052233086480