Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 86.0 7e-12
seq1 86.0 7e-12
>seq1193
Length=173371
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42068 ACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG 42127
||| ||||| ||||||||||||||||| | || | || ||||||||| ||| ||
Sbjct 29170 ACCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGC 29111
Query 42128 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187
|| | || | | ||||||| | ||| || || | |||||||| || || || ||
Sbjct 29110 CTTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAG 29051
Query 42188 CGTCTTTACAAAGATTTGCATT 42209
|||||| |||||||| ||||||
Sbjct 29050 CGTCTTCACAAAGATCTGCATT 29029
>seq1
Length=1245440
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
||| |||| || |||| |||| | ||| |||||| |||||| | ||||||||||| |
Sbjct 738481 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 738539
Query 57055 TACTCACCACTATACTACCGAGGA 57078
||||||||||||||||||||||||
Sbjct 738540 TACTCACCACTATACTACCGAGGA 738563
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | ||| |||||| |||||| | ||||||||||| |||||||||||
Sbjct 762245 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 762186
Query 57065 TATACTACCGAGGA 57078
||||||||||||||
Sbjct 762185 TATACTACCGAGGA 762172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543052233086480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |