Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq153 98.7 1e-15 seq1193 96.9 3e-15 seq2432 84.2 2e-11 >seq153 Length=425603 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | | || ||||| || ||||| || |||| | ||| | | || Sbjct 197880 AAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATC 197939 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||| ||| ||||| | ||||| || |||||||| || ||||||||||| || || Sbjct 197940 CTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTC 197999 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || ||| || | || |||| || || Sbjct 198000 CTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGT 198059 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| |||||||| || || ||||| || |||||| Sbjct 198060 CTTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||| | ||||| || || | |||||||| || | | | || | || Sbjct 197656 AAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAGAATACGTCCATC 197715 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||| ||| | ||||| |||||||| | ||||||| ||||| || || Sbjct 197716 TTCAAGCTGCCTGCGA----AGATGAGTCGCTGCTGACCTGGAGGAACGCCTTCCTTGTC 197771 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||||| || ||||| ||| ||| | |||||| ||| | ||||| | || | || Sbjct 197772 CTGTATCTTC-GCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTCCAATGTGATGG 197830 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 |||| | ||||| || ||||||||||| || |||| Sbjct 197831 TCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATTT 197866 >seq1193 Length=173371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||||| | ||||| || |||||||| || ||||| ||||| || ||||| || || | Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | || ||| || || || |||| || | |||||| |||||||| Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 64297 CTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 || ||| || || | ||||| ||||||||||| |||||||| ||||| || || || | Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA- 32279 Query 64357 TTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415 | || ||||| ||| ||| | ||||| ||| || ||||| | || | |||||| | Sbjct 32278 TCTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCC 32219 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||||| || ||||| |||||||| Sbjct 32218 CAGTCAAAGTCTTCACGAAGATTTGCAT 32191 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| || || ||||| || ||||| || |||||||| || || || || Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || ||| ||| ||||| || | || | ||||||||||| Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 || || || ||||| ||||||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATT 29324 >seq2432 Length=89687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| ||||||| |||||| |||||||| || |||||||| | Sbjct 4351 CCTCCGCGCAGACGAAGCACAAGATGAAGCGTCGACTCTTTTTGGATATTGTAATCCGAC 4410 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 | ||||| |||||||||||||||| || Sbjct 4411 AATGTGCGTCCGTCTTCAAGCTGCTTTCC 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499497111242680