Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq153 98.7 1e-15
seq1193 96.9 3e-15
seq2432 84.2 2e-11
>seq153
Length=425603
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| ||||| | | || ||||| || ||||| || |||| | ||| | | ||
Sbjct 197880 AAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATC 197939
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||| ||| ||||| | ||||| || |||||||| || ||||||||||| || ||
Sbjct 197940 CTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTC 197999
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || ||| | || ||| || | || |||| || ||
Sbjct 198000 CTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGT 198059
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| |||||||| || || ||||| || ||||||
Sbjct 198060 CTTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| | ||| | ||||| || || | |||||||| || | | | || | ||
Sbjct 197656 AAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAGAATACGTCCATC 197715
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||| ||| | ||||| |||||||| | ||||||| ||||| || ||
Sbjct 197716 TTCAAGCTGCCTGCGA----AGATGAGTCGCTGCTGACCTGGAGGAACGCCTTCCTTGTC 197771
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||||| || ||||| ||| ||| | |||||| ||| | ||||| | || | ||
Sbjct 197772 CTGTATCTTC-GCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTCCAATGTGATGG 197830
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445
|||| | ||||| || ||||||||||| || ||||
Sbjct 197831 TCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATTT 197866
>seq1193
Length=173371
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
||||| | ||||| || |||||||| || ||||| ||||| || ||||| || || |
Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | || ||| || || || |||| || | |||||| ||||||||
Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || |||||||||||||||
Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/148 (75%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 64297 CTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356
|| ||| || || | ||||| ||||||||||| |||||||| ||||| || || || |
Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA- 32279
Query 64357 TTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415
| || ||||| ||| ||| | ||||| ||| || ||||| | || | |||||| |
Sbjct 32278 TCTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCC 32219
Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| |||||||| || ||||| ||||||||
Sbjct 32218 CAGTCAAAGTCTTCACGAAGATTTGCAT 32191
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| |||| || || ||||| || ||||| || |||||||| || || || ||
Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
||| ||| ||| | || ||| ||| ||||| || | || | |||||||||||
Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
|| || || ||||| |||||||||
Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATT 29324
>seq2432
Length=89687
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | |||||| ||||||| |||||| |||||||| || |||||||| |
Sbjct 4351 CCTCCGCGCAGACGAAGCACAAGATGAAGCGTCGACTCTTTTTGGATATTGTAATCCGAC 4410
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305
| ||||| |||||||||||||||| ||
Sbjct 4411 AATGTGCGTCCGTCTTCAAGCTGCTTTCC 4439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499497111242680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |