Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 >seq3 Length=1029188 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 95069 TTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGG 95128 || ||| |||||||| ||| ||||| ||||| |||||||||||||| || || | Sbjct 33125 TTTTCAGGCACGGTGTCCGCAACAGTCTGCTGGTGGCGCCCATGCCCACGGCGTCAACAG 33066 Query 95129 CGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC 95188 | ||||| || |||||||| |||||| |||| |||| |||||| ||| | |||| | | Sbjct 33065 CCCAGATTCTCGGCAACAATGAGTCGATCGAGCCCTACACCTCGAACATCTACAGCCGAA 33006 Query 95189 GGGTGCTCGCCGGGGAATTCC 95209 | ||||| | || || |||| Sbjct 33005 GAGTGCTGTCGGGTGACTTCC 32985 Score = 89.7 bits (98), Expect = 5e-13 Identities = 194/289 (67%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGA---CTCCATCTCCGGAAT 93983 ||| || |||| ||||| |||||| |||| | |||||| ||| ||| | || || Sbjct 37252 GCCCCAACTGTCATCGTGCTTCCTGCTGACAAT---GGCCGATGACTCGATCGCGGGCAT 37196 Query 93984 TTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAG 94043 | ||||| || || | ||||| ||||| || ||| || ||||| || | | Sbjct 37195 CTACGACACGCTGAAACAATGTGCTCTGATCTCGAAGAGCGCTGGTGGAATTGGCCTGAA 37136 Query 94044 TGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGG 94103 || ||| | | || || | ||||| || ||| || || |||||||||||||| Sbjct 37135 CGTGCACAAAATCCGCGCTACTGGTTCACTGATTGCCGGCACGAACGGCACCTCCAACGG 37076 Query 94104 CCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGG 94163 || |||| ||||| || |||| ||||||| | || || || |||||||| || || Sbjct 37075 TCTTATCCCGATGCTTCGTGTCTACAACAACACCGCACGATATGTGGACCAAGGCGGAAA 37016 Query 94164 GAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 | | | || | ||||| |||| || || || ||||| |||||| Sbjct 37015 TAAGCGTCCAGGAGCGTTCGCCATCTACCTGGAACCGTGGCATGCGGAC 36967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494576966006120