Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq3 96.9 3e-15
>seq3
Length=1029188
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 95069 TTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGG 95128
|| ||| |||||||| ||| ||||| ||||| |||||||||||||| || || |
Sbjct 33125 TTTTCAGGCACGGTGTCCGCAACAGTCTGCTGGTGGCGCCCATGCCCACGGCGTCAACAG 33066
Query 95129 CGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC 95188
| ||||| || |||||||| |||||| |||| |||| |||||| ||| | |||| | |
Sbjct 33065 CCCAGATTCTCGGCAACAATGAGTCGATCGAGCCCTACACCTCGAACATCTACAGCCGAA 33006
Query 95189 GGGTGCTCGCCGGGGAATTCC 95209
| ||||| | || || ||||
Sbjct 33005 GAGTGCTGTCGGGTGACTTCC 32985
Score = 89.7 bits (98), Expect = 5e-13
Identities = 194/289 (67%), Gaps = 6/289 (2%)
Strand=Plus/Minus
Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGA---CTCCATCTCCGGAAT 93983
||| || |||| ||||| |||||| |||| | |||||| ||| ||| | || ||
Sbjct 37252 GCCCCAACTGTCATCGTGCTTCCTGCTGACAAT---GGCCGATGACTCGATCGCGGGCAT 37196
Query 93984 TTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAG 94043
| ||||| || || | ||||| ||||| || ||| || ||||| || | |
Sbjct 37195 CTACGACACGCTGAAACAATGTGCTCTGATCTCGAAGAGCGCTGGTGGAATTGGCCTGAA 37136
Query 94044 TGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGG 94103
|| ||| | | || || | ||||| || ||| || || ||||||||||||||
Sbjct 37135 CGTGCACAAAATCCGCGCTACTGGTTCACTGATTGCCGGCACGAACGGCACCTCCAACGG 37076
Query 94104 CCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGG 94163
|| |||| ||||| || |||| ||||||| | || || || |||||||| || ||
Sbjct 37075 TCTTATCCCGATGCTTCGTGTCTACAACAACACCGCACGATATGTGGACCAAGGCGGAAA 37016
Query 94164 GAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212
| | | || | ||||| |||| || || || ||||| ||||||
Sbjct 37015 TAAGCGTCCAGGAGCGTTCGCCATCTACCTGGAACCGTGGCATGCGGAC 36967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494576966006120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |