Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq153 100 7e-16 seq1193 89.7 1e-12 >seq153 Length=425603 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || | ||||| || |||| ||| ||||| | | ||| Sbjct 197872 CGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTG 197931 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||| || ||||| || |||| ||||||||||| |||||||| || ||||||| Sbjct 197932 TGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCT 197991 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| || || | || || || || | Sbjct 197992 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGG 198051 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||||| || || | || ||||| || || || Sbjct 198052 GTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTG 198089 >seq1193 Length=173371 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 |||||||||||||| || ||||| ||||| ||||||||| ||||| |||||| | Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| || | || || | | ||| || || | |||||||| || |||||||| Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 199610 GTTTTCACAAAAATTTG 199626 |||||||| || ||||| Sbjct 27112 GTTTTCACGAAGATTTG 27096 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 |||||||||||||| ||||||||||| ||| || || || || || ||||| | Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| ||||| | || ||| || ||||| ||||| ||||| || || || Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 199610 GTTTTCACAAAAATTTG 199626 || |||||||| || || Sbjct 29049 GTCTTCACAAAGATCTG 29033 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 || ||| || ||||||||||| ||||||||||| ||| ||| ||||| ||||| || Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 ||| || || |||| || || | | |||||| ||||| ||||| ||||| || Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218 Query 199603 CGTGAGAGTTTTCACAAAAATTTG 199626 || | ||| ||||| || ||||| Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTG 32194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178564413649349