Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq153 100 7e-16
seq1193 89.7 1e-12
>seq153
Length=425603
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || || || || | ||||| || |||| ||| ||||| | | |||
Sbjct 197872 CGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTG 197931
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||| || ||||| || |||| ||||||||||| |||||||| || |||||||
Sbjct 197932 TGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCT 197991
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| |||| || || | || || || || |
Sbjct 197992 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGG 198051
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||||| || || | || ||||| || || ||
Sbjct 198052 GTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTG 198089
>seq1193
Length=173371
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
|||||||||||||| || ||||| ||||| ||||||||| ||||| |||||| |
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
||||| || | || || | | ||| || || | |||||||| || ||||||||
Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113
Query 199610 GTTTTCACAAAAATTTG 199626
|||||||| || |||||
Sbjct 27112 GTTTTCACGAAGATTTG 27096
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
|||||||||||||| ||||||||||| ||| || || || || || ||||| |
Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
|||||| |||| ||||| | || ||| || ||||| ||||| ||||| || || ||
Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050
Query 199610 GTTTTCACAAAAATTTG 199626
|| |||||||| || ||
Sbjct 29049 GTCTTCACAAAGATCTG 29033
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542
|| ||| || ||||||||||| ||||||||||| ||| ||| ||||| ||||| ||
Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278
Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602
||| || || |||| || || | | |||||| ||||| ||||| ||||| ||
Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218
Query 199603 CGTGAGAGTTTTCACAAAAATTTG 199626
|| | ||| ||||| || |||||
Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTG 32194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178564413649349
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |