Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1193 93.3 5e-14 seq153 91.5 2e-13 >seq1193 Length=173371 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 |||||||| || | ||||||||||| | || | || ||||||||| ||||||| | Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | ||||||| | ||| || |||| |||||||| || || |||||| Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 46574 GTTTTAACAAAGATTTGCATT 46594 || || |||||||| |||||| Sbjct 29049 GTCTTCACAAAGATCTGCATT 29029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| | ||||||||| | ||| ||||||||||| |||||||| | Sbjct 29623 TGCCTCCTCGGAGACGAAGCACCAGATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCCG 29564 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | |||||||| |||| |||||||||||||| Sbjct 29563 AGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 29533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| | ||||||||||| ||| ||||| ||||| || ||||| | Sbjct 29922 TGCCTCCTCGGAGACGAAGCACCAGATGCAGTGTGGATTCCTTCTGGATGTTATAGTCTG 29863 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | |||||||| |||| |||||||||||||| Sbjct 29862 AGAGAGTGCGTCCGTCCTCGAGCTGCTTGCC 29832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| | ||||||||| | || |||||| |||||||||||||| | Sbjct 32191 TGCCTCCTCGGAGACGAAGCACCAGATGGAGCGTCGACTCCTTCTGGATATTGTAGTCCG 32132 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | |||||||| |||| |||||||| ||||| Sbjct 32131 ACAGAGTGCGTCCGTCCTCGAGCTGTTTGCC 32101 >seq153 Length=425603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 46384 CACCAGATGCA--ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 ||||||||||| ||| ||||| || ||||| || ||||| || |||||| | | || Sbjct 197883 CACCAGATGCAGTATGGACTCT--TTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCC 197940 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 |||||||| ||| |||| || || | || |||||||| | || | | ||||||||| Sbjct 197941 TCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCC 198000 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 ||||||| ||| | || | | ||| || | || || || | ||| | || Sbjct 198001 TGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTC 198060 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || |||| ||| || || ||||| |||||| Sbjct 198061 TTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565071322594440