Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2432 89.7 5e-13 seq405 84.2 2e-11 seq1193 82.4 8e-11 >seq2432 Length=89687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||||||||| |||||||| || || ||||||||| | || ||||| ||| | Sbjct 6464 AATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTC 6405 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||||||||| ||||| | || || Sbjct 6404 AGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCA 6345 Query 38363 ACAGCGGCTCATTTACGCGGGCAA 38386 ||||| | |||| ||| || || Sbjct 6344 GCAGCGTTTGATTTTCGCCGGTAA 6321 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || || |||||| | || ||||||||| | Sbjct 8223 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCA 8164 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||| || | ||||| ||||||||||| | || || Sbjct 8163 GACACCATCGAAAACG-TCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCA 8105 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACA 38389 ||||| | || | ||||| || || Sbjct 8104 GCAGCGATTGATCTTTGCGGGTAAGCA 8078 >seq405 Length=308142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 38232 CTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGAC 38291 |||||||| || ||||||| ||||| || || |||||||| || || |||||| |||| Sbjct 21214 CTCTTTAAGTAA-TGCAAATCTTCGTGAAGACTCTCACGGGAAAGACGATCACCCTCGAG 21272 Query 38292 GTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATT 38351 ||||| ||| | |||| | | | | || | || |||| ||||| ||||| ||| Sbjct 21273 GTCGAAGCCTCGGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATT 21332 Query 38352 CCCGCCGACCAACAGCGGCTCAT 38374 || | ||||||||||| || || Sbjct 21333 CCTCCAGACCAACAGCGACTGAT 21355 >seq1193 Length=173371 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 ||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | ||| Sbjct 29533 GGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAAAAGGAATCTACG 29592 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||| ||||||| ||| | |||| ||| Sbjct 29593 CTCCATCTGGTGCTTCGTCTCCGAGGAGGC 29622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500024955172480