Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2969 95.1 9e-14 >seq2969 Length=69424 Score = 95.1 bits (104), Expect = 9e-14 Identities = 459/723 (63%), Gaps = 8/723 (1%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 || ||||| ||||| | ||||| || || || || || || || || || | | | Sbjct 51347 AGGATAGCGGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCGGGGTTGATCGACTTG 51288 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 517707 || |||| || || ||| | || || || || | ||| |||||||| ||||| | Sbjct 51287 TTCAGTTCCTTGCCGGAGAACAGATCGGAGAGCAGCT-TCTGGACCTTAGGGATACGGGT 51229 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767 |||||||| || | || || || |||||||| || |||| || | || | Sbjct 51228 GGATCCTCCGACCAGGACGATGTCGTGCACCTGGCTCTTGTCCATCTTGGCGTCTCTCAG 51169 Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTT 517827 || || ||||| || | | | || | ||| | || || || ||||| Sbjct 51168 CGACTTCTCGACGGGGTCCATGGTGGAGCGGAAGAGGTCAGCGCAGAGCTCCTCGAAACG 51109 Query 517828 AGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886 || | ||||| || | || || ||||| || ||||||| || || | || |||| Sbjct 51108 GGCACGAGTAAT-GTTAGTGTAGAAGTCAATACCCTCGAACAGCGAGTCGATCTCGATCG 51050 Query 517887 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 517946 || || | || || || || | ||| || |||||||| || || || | |||| || Sbjct 51049 AAGCCTGGGATGACGATGAGAGGGTACGCTTTGCACGTTCGCAGGCGGTGCGGAGTCGTC 50990 Query 517947 GTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC 518004 | | ||| | ||||| | ||| ||| | || | || | |||||| || | || Sbjct 50989 GAAGGGCACGAG--GATTGGTGTTCAGATCCTTCTTGTGCTTGCGCTTGAACTCGGCGAC 50932 Query 518005 ACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGT 518064 | | | || | || || || || || || ||||| | | || | ||| | || Sbjct 50931 AAAGTGGTTGACCATTCGGTTGTCGAAGTCCTCTCCTCCAAGATGGGTGTCTCCAGCGGT 50872 Query 518065 AGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACC 518124 | | |||| ||| | ||| || || | | || | | ||||| ||| ||||| Sbjct 50871 GGACTTGACTTCGAAGATTCCGTCCTCGATGGTCAGGATGGACACATCGAAGGTACCACC 50812 Query 518125 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGC 518184 || | ||| || || || || || ||| | || || || ||||| || || Sbjct 50811 TCCAAGATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGACCGTAGGC 50752 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 | |||||||||||| ||||| || || |||| | ||||| || || || || ||| Sbjct 50751 GATAGCAGCAGCAGTGGGTTCGTTGATGATTCGAAGGACATTCAGGCCGGCGATGGCTCC 50692 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||||| || |||||||| | ||||| ||||| || || || || || || | ||||| Sbjct 50691 AGCATCCTTGGTGGCTTGACGCTGTGAGTCGTTGAAGTAGGCCGGTACGGTGACGACGGC 50632 Query 518305 ATC 518307 ||| Sbjct 50631 ATC 50629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779648957966782