Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 286 4e-72
seq340 150 2e-31
>seq2969
Length=69424
Score = 286 bits (316), Expect = 4e-72
Identities = 576/852 (68%), Gaps = 2/852 (0%)
Strand=Plus/Minus
Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947
|||| | || || ||||| || ||| || | | ||||| | ||||| ||| |
Sbjct 51478 TCTTGGTCGGGATGGTCGTGTTCCTCTTGATGAGTGCCGTCATCACTCCACCTGCAGTCT 51419
Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007
||| || || ||||| || | ||||| | ||| | || || || |||| ||| |
Sbjct 51418 CGATACCGAGCGACAGTGGGGCGACGTCGAGGAGCAGGAGATCCTGCACAGCCTCGGACT 51359
Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067
|| || | | ||| ||||||||||| | || ||||| ||||| ||||| |||||||
Sbjct 51358 TGTCTCCAGAGAGGATAGCGGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCGGGGT 51299
Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127
| |||| || |||||||| || ||| || ||| || | || | || | || |
Sbjct 51298 TGATCGACTTGTTCAGTTCCTTGCCGGAGAACAGATCGGAGAGCAGCTTCTGGACCTTAG 51239
Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187
|||| || || ||||| ||||||| ||||| || | ||| | || || ||||| |
Sbjct 51238 GGATACGGGTGGATCCTCCGACCAGGACGATGTCGTGCACCTGGCTCTTGTCCATCTTGG 51179
Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247
||||| || | || ||||| || ||||| ||||| | ||| || || |
Sbjct 51178 CGTCTCTCAGCGACTTCTCGACGGGGTCCATGGTGGAGCGGAAGAGGTCAGCGCAGAGCT 51119
Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307
|||| ||||| ||||| |||||| || ||||| |||| || ||| | | ||| || |
Sbjct 51118 CCTCGAAACGGGCACGAGTAATGTTAGTGTAGAAGTCAATACCCTCGAACAGCGAGTCGA 51059
Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367
| || || | | || | | ||| || | || |||||||| || || || || || |
Sbjct 51058 TCTCGATCGAAGCCTGGGATGACGATGAGAGGGTACGCTTTGCACGTTCGCAGGCGGTGC 50999
Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427
| | || ||||||||||| || || | | ||| ||||| || || || || ||||
Sbjct 50998 GGAGTCGTCGAAGGGCACGAGGATTGGTGTTCAGATCCTTCTTGTGCTTGCGCTTGAACT 50939
Query 7428 CTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCC 7487
| | ||||| | | || ||||| || || || || | || || || |
Sbjct 50938 CGGCGACAAAGTGGTTGACCATTCGGTTGTCGAAGTCCTCTCCTCCAAGATGGGTGTCTC 50879
Query 7488 CCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACG 7547
| ||||| | |||||||| ||||| || | || ||| | | | || ||||| || |
Sbjct 50878 CAGCGGTGGACTTGACTTCGAAGATTCCGTCCTCGATGGTCAGGATGGACACATCGAAGG 50819
Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGAC 7607
||||||| || || || || ||||| ||||| || || ||||| |||||||
Sbjct 50818 TACCACCTCCAAGATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGAC 50759
Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCA 7666
|||| |||||||| || || || ||||| || || || |||| |||| |||||||| ||
Sbjct 50758 CGTAGGCGATAGCAGCAGCAGTGGGTTCGTTGATGATTCGAAGGACA-TTCAGGCCGGCG 50700
Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726
|| | | | ||||| || || ||||| || || || ||||| ||||||||||| || ||
Sbjct 50699 ATGGCTCCAGCATCCTTGGTGGCTTGACGCTGTGAGTCGTTGAAGTAGGCCGGTACGGTG 50640
Query 7727 ACGACCGCGTCC 7738
||||| || |||
Sbjct 50639 ACGACGGCATCC 50628
>seq340
Length=327483
Score = 150 bits (166), Expect = 2e-31
Identities = 171/227 (75%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACA 7653
||||| ||||||||||| ||||| || || || || || || || || || | || |||
Sbjct 32875 TTCTTGTCGAGACCGTAGGCGATGGCGGCTGCGGTGGGCTCGTTGATGATTCGGACGAC- 32817
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
|||||| || || || ||| | ||||| || || ||||| || || | ||||| |||||
Sbjct 32816 GTTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCTTGACGCTGGGCGTCGTTGAAGTA 32757
Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773
||| || || || ||||| |||| | | |||| ||| || |||||||| || || || ||
Sbjct 32756 GGCTGGCACGGTGACGACGGCGTTCTTCACTTCCTTGCCCAGATACGACTCGGCAATCTC 32697
Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820
|||||||| || | ||||| ||||| |||||||| | || ||||
Sbjct 32696 CTTCATTTTCGTCAACACCATGGATGAGATCTCTTCCGGTGCGAACT 32650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634945062683480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |