Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2969 286 4e-72 seq340 150 2e-31 >seq2969 Length=69424 Score = 286 bits (316), Expect = 4e-72 Identities = 576/852 (68%), Gaps = 2/852 (0%) Strand=Plus/Minus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | || || ||||| || ||| || | | ||||| | ||||| ||| | Sbjct 51478 TCTTGGTCGGGATGGTCGTGTTCCTCTTGATGAGTGCCGTCATCACTCCACCTGCAGTCT 51419 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 ||| || || ||||| || | ||||| | ||| | || || || |||| ||| | Sbjct 51418 CGATACCGAGCGACAGTGGGGCGACGTCGAGGAGCAGGAGATCCTGCACAGCCTCGGACT 51359 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 || || | | ||| ||||||||||| | || ||||| ||||| ||||| ||||||| Sbjct 51358 TGTCTCCAGAGAGGATAGCGGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCGGGGT 51299 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 | |||| || |||||||| || ||| || ||| || | || | || | || | Sbjct 51298 TGATCGACTTGTTCAGTTCCTTGCCGGAGAACAGATCGGAGAGCAGCTTCTGGACCTTAG 51239 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 |||| || || ||||| ||||||| ||||| || | ||| | || || ||||| | Sbjct 51238 GGATACGGGTGGATCCTCCGACCAGGACGATGTCGTGCACCTGGCTCTTGTCCATCTTGG 51179 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 ||||| || | || ||||| || ||||| ||||| | ||| || || | Sbjct 51178 CGTCTCTCAGCGACTTCTCGACGGGGTCCATGGTGGAGCGGAAGAGGTCAGCGCAGAGCT 51119 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 |||| ||||| ||||| |||||| || ||||| |||| || ||| | | ||| || | Sbjct 51118 CCTCGAAACGGGCACGAGTAATGTTAGTGTAGAAGTCAATACCCTCGAACAGCGAGTCGA 51059 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 | || || | | || | | ||| || | || |||||||| || || || || || | Sbjct 51058 TCTCGATCGAAGCCTGGGATGACGATGAGAGGGTACGCTTTGCACGTTCGCAGGCGGTGC 50999 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | | || ||||||||||| || || | | ||| ||||| || || || || |||| Sbjct 50998 GGAGTCGTCGAAGGGCACGAGGATTGGTGTTCAGATCCTTCTTGTGCTTGCGCTTGAACT 50939 Query 7428 CTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCC 7487 | | ||||| | | || ||||| || || || || | || || || | Sbjct 50938 CGGCGACAAAGTGGTTGACCATTCGGTTGTCGAAGTCCTCTCCTCCAAGATGGGTGTCTC 50879 Query 7488 CCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACG 7547 | ||||| | |||||||| ||||| || | || ||| | | | || ||||| || | Sbjct 50878 CAGCGGTGGACTTGACTTCGAAGATTCCGTCCTCGATGGTCAGGATGGACACATCGAAGG 50819 Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGAC 7607 ||||||| || || || || ||||| ||||| || || ||||| ||||||| Sbjct 50818 TACCACCTCCAAGATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGAC 50759 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCA 7666 |||| |||||||| || || || ||||| || || || |||| |||| |||||||| || Sbjct 50758 CGTAGGCGATAGCAGCAGCAGTGGGTTCGTTGATGATTCGAAGGACA-TTCAGGCCGGCG 50700 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || | | | ||||| || || ||||| || || || ||||| ||||||||||| || || Sbjct 50699 ATGGCTCCAGCATCCTTGGTGGCTTGACGCTGTGAGTCGTTGAAGTAGGCCGGTACGGTG 50640 Query 7727 ACGACCGCGTCC 7738 ||||| || ||| Sbjct 50639 ACGACGGCATCC 50628 >seq340 Length=327483 Score = 150 bits (166), Expect = 2e-31 Identities = 171/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACA 7653 ||||| ||||||||||| ||||| || || || || || || || || || | || ||| Sbjct 32875 TTCTTGTCGAGACCGTAGGCGATGGCGGCTGCGGTGGGCTCGTTGATGATTCGGACGAC- 32817 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||| || || || ||| | ||||| || || ||||| || || | ||||| ||||| Sbjct 32816 GTTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCTTGACGCTGGGCGTCGTTGAAGTA 32757 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| || || || ||||| |||| | | |||| ||| || |||||||| || || || || Sbjct 32756 GGCTGGCACGGTGACGACGGCGTTCTTCACTTCCTTGCCCAGATACGACTCGGCAATCTC 32697 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 |||||||| || | ||||| ||||| |||||||| | || |||| Sbjct 32696 CTTCATTTTCGTCAACACCATGGATGAGATCTCTTCCGGTGCGAACT 32650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634945062683480