Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1193 131 4e-25 seq2432 122 2e-22 seq405 118 2e-21 seq153 116 8e-21 seq12137 109 1e-18 >seq1193 Length=173371 Score = 131 bits (144), Expect = 4e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| |||||||| |||||||| ||||||||||| |||||||| || || Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| || ||||| || || || || ||||| | ||||||||| || Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 |||||| || ||||| | ||||||| Sbjct 30249 CAAAGTCTTCACGAAGATTTGCATT 30225 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| |||||||| |||||||| ||||||||||| |||||||| || || Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| || ||||| || || || || | ||| | ||||| ||||| Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 31250 CAGTGTCTTCACGAAGATTTGCATT 31226 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| |||||||| |||||||| ||||||||||| |||||||| || || Sbjct 31668 TACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCG 31609 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || ||||| || ||||| || ||| || || | ||| | |||||||| |||| Sbjct 31608 CCTTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCA 31549 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | ||||||| Sbjct 31548 AGGTCTTCACGAAAATTTGCATT 31526 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || || ||||| || |||||||| |||||||||||||| || || || Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||| ||||| || |||||| ||||| || | |||||| || || Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATT 29324 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 || ||||||||||||||| ||||| || |||||||||||||| ||||| ||||| || || Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 || ||||| ||||| || || || || ||| ||||| | || | ||||| || Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || ||||| | |||||| Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTGCAT 32191 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||||| ||| || ||||||||||||||||| |||||||| || || Sbjct 30065 CTTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 30006 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| || || || || ||| ||||| | || | ||||| || || Sbjct 30005 CGCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGT 29946 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | |||||| Sbjct 29945 CAAGGTCTTCACGAAGATTTGCAT 29922 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| |||||||| ||||| || ||||||||||| ||||| || |||||||| || || Sbjct 29170 ACCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGC 29111 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| |||||||| || ||||| || ||| ||||| | || | ||||||||||||| Sbjct 29110 CTTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAG 29051 Query 195120 AGTTTTTACGAACACTTGCATT 195141 || || || || | |||||| Sbjct 29050 CGTCTTCACAAAGATCTGCATT 29029 >seq2432 Length=89687 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||| ||||| || ||||||||||| || ||||| ||||||||||| || Sbjct 8393 ACCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGC 8452 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||||| ||||| || ||||| || ||||| || ||||||| ||||| ||||| | Sbjct 8453 TTTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAG 8512 Query 195120 AGTTTTTACGAACACTTGCATT 195141 ||||| ||||| | ||||||| Sbjct 8513 CGTTTTAACGAAGATTTGCATT 8534 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| || ||||| | ||| || || ||||||||||| || || ||||||||||| Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| ||||||||| || |||||||| || || ||||| ||||| | |||||||| Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCAT 8223 Score = 102 bits (112), Expect = 2e-16 Identities = 115/151 (76%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||||||||||||||| | ||| ||||| ||||| ||||| ||||| |||||||| || Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 4857 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCG--AACTTTCC--ACTTCAAGGGTAACCGTCTT 195110 || |||||||||||| || || || | | |||| | || |||| || | ||||| Sbjct 4858 TTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGTCTT 4917 Query 195111 TCCTGTCA-AAGTTTTTACGAACACTTGCAT 195140 ||| || | ||| |||||||| | ||||| Sbjct 4918 TCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||| ||||| || || ||||| ||||| || || ||||| || || || Sbjct 4502 ACCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGC 4561 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| ||||| || ||||| ||| |||||| || || || | ||||| || || | Sbjct 4562 CTTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGAG 4621 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || |||||||| | ||||| Sbjct 4622 CGTCTTTACGAAGATCTGCAT 4642 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| ||||| || | || || || || |||||||| || ||||||||||| || | Sbjct 6319 GCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCT 6378 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||| ||||| |||||||| || ||| || || ||||| | ||||| || | Sbjct 6379 TGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAG 6438 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | || |||||||| | |||||| Sbjct 6439 TGAGCGTCTTTACGAATATCTGCATT 6464 >seq405 Length=308142 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| ||||| ||||| ||||||||||||||||| || || ||||| || || || Sbjct 21366 TACCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGG 21307 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || ||||| || |||||||| ||| || || ||||| | ||||||||| || | Sbjct 21306 CCTTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGA 21247 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| | ||||||| Sbjct 21246 GAGTCTTCACGAAGATTTGCATT 21224 >seq153 Length=425603 Score = 116 bits (128), Expect = 8e-21 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| || | || ||||| |||| |||| | | |||||||| |||||| Sbjct 197666 TGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAGAATACGTCCATCTTCAAGCTGC 197725 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||||| ||||| || || ||||||||| |||||| ||||| || || || Sbjct 197726 ----CTGCGAAGATGAGTCGCTGCTGACCTGGAGGAACGCCTTCCTTGTCCTGTATCTTC 197781 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| |||||||| || || || | | ||||| | || | ||||| | ||| Sbjct 197782 GCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTCCAATGTGATGGTCTTCGCAGTC 197841 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || || |||||||| | || |||| Sbjct 197842 AAGGTCTTTACGAAAATCTGAATTT 197866 >seq12137 Length=1209 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| |||||| ||||| |||||||| || ||||||||||| || || ||||||||||||| Sbjct 994 GCTCACCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTT 1053 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || ||||| |||||||| || || ||||| || || | |||||||| | Sbjct 1054 TGGCCTTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAG 1113 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | || || ||||| | ||||| Sbjct 1114 TGAGCGTCTTAACGAAGATCTGCAT 1138 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||| ||| || ||||| | ||| ||||| ||||| ||||| ||||| |||||||| || Sbjct 685 TGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 744 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || |||||||||||| || || || ||| ||| || || | ||| | |||||||| Sbjct 745 TTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCA 804 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||| |||||||| | |||||| Sbjct 805 GTAAGAGTCTTTACGAATATCTGCATT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109145452385249