Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq153 111 1e-19 seq405 84.2 1e-11 seq1193 82.4 5e-11 >seq153 Length=425603 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||||||||| ||||| | || |||| || |||||||| ||||||| Sbjct 197902 TCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAG 197961 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | || |||||||| |||||| || ||| Sbjct 197962 ATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTC 198021 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| || | ||| || | ||| | || ||||| || | |||||||| Sbjct 198022 TCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACG 198081 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 198082 AAGATCTGCAT 198092 >seq405 Length=308142 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || ||||| || ||||| || |||||| | || | |||||||||||| ||||| Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305 Query 34902 TTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 || || || || |||| || ||| || || |||| ||| || || |||||||||| Sbjct 21304 TTCAC--ATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGA 21247 Query 34960 GAGTCTTCACAAAGATCTGCAT 34981 |||||||||| ||||| ||||| Sbjct 21246 GAGTCTTCACGAAGATTTGCAT 21225 >seq1193 Length=173371 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || ||||| || || ||||||||||||||| | || | || |||||||| |||||| Sbjct 31369 TTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTC 31310 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 || ||| | || | ||| ||||||||| || | ||| ||||| || || || Sbjct 31309 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 31250 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||| ||||| Sbjct 31249 AGTGTCTTCACGAAGATTTGCAT 31227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324540041306616