Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq153 111 1e-19
seq405 84.2 1e-11
seq1193 82.4 5e-11
>seq153
Length=425603
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||||||||| ||||| | || |||| || |||||||| |||||||
Sbjct 197902 TCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAG 197961
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || |||||||||||| | || | || |||||||| |||||| || |||
Sbjct 197962 ATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTC 198021
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| || | ||| || | ||| | || ||||| || | ||||||||
Sbjct 198022 TCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACG 198081
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 198082 AAGATCTGCAT 198092
>seq405
Length=308142
Score = 84.2 bits (92), Expect = 1e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||| || |||||| | || | |||||||||||| |||||
Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305
Query 34902 TTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959
|| || || || |||| || ||| || || |||| ||| || || ||||||||||
Sbjct 21304 TTCAC--ATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGA 21247
Query 34960 GAGTCTTCACAAAGATCTGCAT 34981
|||||||||| ||||| |||||
Sbjct 21246 GAGTCTTCACGAAGATTTGCAT 21225
>seq1193
Length=173371
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898
|| ||||| || || ||||||||||||||| | || | || |||||||| ||||||
Sbjct 31369 TTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTC 31310
Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958
|| ||| | || | ||| ||||||||| || | ||| ||||| || || ||
Sbjct 31309 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 31250
Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||| ||||| |||||
Sbjct 31249 AGTGTCTTCACGAAGATTTGCAT 31227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324540041306616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |