Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2969 104 2e-16 seq1193 86.0 5e-11 >seq2969 Length=69424 Score = 104 bits (114), Expect = 2e-16 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | || ||||| || || || || |||||||| |||||||| || || || Sbjct 50628 GGATGCCGTCGTCACCGTACCGGCCTACTTCAACGACTCACAGCGTCAAGCCACCAAGGA 50687 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||||| || || || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 50688 TGCTGGAGCCATCGCCGGCCTGAATGTCCTTCGAATCATCAACGAACCCACTGCTGCTGC 50747 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575 | || || || || || || | | ||| | || || |||||||| ||| Sbjct 50748 TATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCT 50807 Query 550576 TGGAGGT 550582 ||||||| Sbjct 50808 TGGAGGT 50814 >seq1193 Length=173371 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||| || || |||| ||||||||| || ||||||||||| || || || || ||| Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||| ||||||| | | | || ||||| || | ||||| || || || Sbjct 27172 TTCACATTCTCAATCGTATCAGAG-GCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAG 27114 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| ||||| |||||||| Sbjct 27113 GGTTTTCACGAAGATTTGCAT 27093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028045439992030