Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 104 2e-16
seq1193 86.0 5e-11
>seq2969
Length=69424
Score = 104 bits (114), Expect = 2e-16
Identities = 135/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| || | || ||||| || || || || |||||||| |||||||| || || ||
Sbjct 50628 GGATGCCGTCGTCACCGTACCGGCCTACTTCAACGACTCACAGCGTCAAGCCACCAAGGA 50687
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||||||| || || || || ||||| ||||| || ||||| ||||| |||||||||||
Sbjct 50688 TGCTGGAGCCATCGCCGGCCTGAATGTCCTTCGAATCATCAACGAACCCACTGCTGCTGC 50747
Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575
| || || || || || || | | ||| | || || |||||||| |||
Sbjct 50748 TATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCT 50807
Query 550576 TGGAGGT 550582
|||||||
Sbjct 50808 TGGAGGT 50814
>seq1193
Length=173371
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
||||| || || |||| ||||||||| || ||||||||||| || || || || |||
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || |||||| ||||||| | | | || ||||| || | ||||| || || ||
Sbjct 27172 TTCACATTCTCAATCGTATCAGAG-GCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAG 27114
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||| ||||| ||||||||
Sbjct 27113 GGTTTTCACGAAGATTTGCAT 27093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028045439992030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |