Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1193 102 6e-17 seq362 95.1 1e-14 seq2432 93.3 3e-14 seq12137 86.0 5e-12 >seq1193 Length=173371 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| ||| || ||||| || || ||||||||||| || || || || Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||||| | |||||| ||||| |||| ||| |||||||| Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 | || || || || || ||||| | ||||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATTCCTCCGCGAAG 29313 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | |||||||||||| || || |||||||| || || ||||| || Sbjct 29764 TACCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCG 29705 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || | || | |||||||| | || || || || |||| ||| || ||||| | Sbjct 29704 CCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCA 29645 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 | ||||| || || || |||||| Sbjct 29644 ACGTTTTCACGAAGATTTGCATG 29622 >seq362 Length=320851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||| | || | |||||||||||||||||||| ||||| || || ||||| || Sbjct 3795 CTCACCTGCGTAAATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTT 3854 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||| ||| |||| | |||||||| | || || | || ||||| || || ||||| Sbjct 3855 CAGTTTCACATTTTCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGT 3914 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | |||||| || || | |||||| Sbjct 3915 GAGAGTTTTCACGAAGACTTGCATG 3939 >seq2432 Length=89687 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 || ||||||| || || ||||||||||| ||||| || ||||| || ||||| ||||| | Sbjct 6316 ATCGCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGA 6375 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 | || || ||| | || | ||||| || | ||| || || || |||| || || | Sbjct 6376 TCTTGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCC 6435 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | || | || ||||| ||||||||||| | | |||||| Sbjct 6436 CAGTGAGCGTCTTTACGAATATCTGCATTCCTCCTCGAAGA 6476 >seq12137 Length=1209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || || |||| ||| ||||| ||||| ||||||||||| || ||||| ||||| || ||| Sbjct 679 TCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCT 738 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || || || | || | || || || | ||| || || | |||| || Sbjct 739 TGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTC 798 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| ||||| ||||||||||| Sbjct 799 TTTCCAGTAAGAGTCTTTACGAATATCTGCAT 830 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||| ||||||||| |||| || || ||||| || ||||| || || || |||||||||| Sbjct 994 GCTCACCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTT 1053 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || ||| | || | ||||| || | || ||||| ||||||| || || || | Sbjct 1054 TGGCCTTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAG 1113 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 | | || || || || ||||||||| Sbjct 1114 TGAGCGTCTTAACGAAGATCTGCATG 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396164193431979