Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 102 6e-17
seq362 95.1 1e-14
seq2432 93.3 3e-14
seq12137 86.0 5e-12
>seq1193
Length=173371
Score = 102 bits (112), Expect = 6e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| ||||| |||| ||| || ||||| || || ||||||||||| || || || ||
Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | |||||||| | |||||| ||||| |||| ||| ||||||||
Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481
| || || || || || ||||| | |||||||
Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATTCCTCCGCGAAG 29313
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| || | |||||||||||| || || |||||||| || || ||||| ||
Sbjct 29764 TACCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCG 29705
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|| || | || | |||||||| | || || || || |||| ||| || ||||| |
Sbjct 29704 CCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCA 29645
Query 101448 AAGTTTTTACAAATATCTGCATG 101470
| ||||| || || || ||||||
Sbjct 29644 ACGTTTTCACGAAGATTTGCATG 29622
>seq362
Length=320851
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| |||||| | || | |||||||||||||||||||| ||||| || || ||||| ||
Sbjct 3795 CTCACCTGCGTAAATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTT 3854
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|||| ||| |||| | |||||||| | || || | || ||||| || || |||||
Sbjct 3855 CAGTTTCACATTTTCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGT 3914
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
| |||||| || || | ||||||
Sbjct 3915 GAGAGTTTTCACGAAGACTTGCATG 3939
>seq2432
Length=89687
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381
|| ||||||| || || ||||||||||| ||||| || ||||| || ||||| ||||| |
Sbjct 6316 ATCGCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGA 6375
Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441
| || || ||| | || | ||||| || | ||| || || || |||| || || |
Sbjct 6376 TCTTGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCC 6435
Query 101442 CGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
| || | || ||||| ||||||||||| | | ||||||
Sbjct 6436 CAGTGAGCGTCTTTACGAATATCTGCATTCCTCCTCGAAGA 6476
>seq12137
Length=1209
Score = 86.0 bits (94), Expect = 5e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| || |||| ||| ||||| ||||| ||||||||||| || ||||| ||||| || |||
Sbjct 679 TCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCT 738
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| || || || || | || | || || || | ||| || || | |||| ||
Sbjct 739 TGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTC 798
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || | ||| ||||| |||||||||||
Sbjct 799 TTTCCAGTAAGAGTCTTTACGAATATCTGCAT 830
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
||| ||||||||| |||| || || ||||| || ||||| || || || ||||||||||
Sbjct 994 GCTCACCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTT 1053
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| || ||| | || | ||||| || | || ||||| ||||||| || || || |
Sbjct 1054 TGGCCTTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAG 1113
Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470
| | || || || || |||||||||
Sbjct 1114 TGAGCGTCTTAACGAAGATCTGCATG 1139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396164193431979
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |