Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 8e-14 >seq3 Length=1029188 Score = 93.3 bits (102), Expect = 8e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 ||||| | ||||| || ||||| ||||| || | ||| | ||| || ||| | || Sbjct 32975 TTCACAATCTGGAAGTCACCCGACAGCACTCTTCGGCTGTAGATGTTCGAGGTGTAGGGC 33034 Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 ||||| ||| |||||||| || ||||| || || || ||||||||||| |||||| Sbjct 33035 TCGATCGACTCATTGTTGCCGAGAATCTGGGCTGTTGACGCCGTGGGCATGGGCGCCACC 33094 Query 221237 AGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 33095 AGCAGACTGTTGCG 33108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928570245087680