Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq498 105 4e-17 seq2432 87.8 1e-11 seq1193 87.8 1e-11 >seq498 Length=282916 Score = 105 bits (116), Expect = 4e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA 474726 |||||| | ||||| | | || ||||| | | ||| ||| || || |||||| | || Sbjct 131307 ATTTCTGCGATGGTGCTCGGAAAGATGAAGGAGATCGCAGAG-TCCTACCTTGGAAAGGA 131365 Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||| | | || || | ||||| || |||||||| ||||| | || || ||||| || Sbjct 131366 AGTGAAGCACGCTGTTGTCACTGTCCCGGCATATTTCAATGACGCCCAGCGACAAGCCAC 131425 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 || || || |||| || || |||||||| ||| | || ||||| || ||||| ||||| Sbjct 131426 AAAGGACGCCGGAACCATCGCCGGTCTTAACGTTGTCCGCATTATAAACGAACCCACAGC 131485 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||||| | || ||||| || || || || Sbjct 131486 AGCCGCTATCGCCTATGGACTCGACAAAAA 131515 >seq2432 Length=89687 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| || ||||| || | || || ||||| ||||||||||| ||||||||||||||| Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746 ||| ||||| ||| || || || | | ||| ||||| || || || || Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197 Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||||||||| || || Sbjct 8198 GTGAGCGTCTTAACGAAGATCTG 8220 >seq1193 Length=173371 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 || ||| ||||| || |||| | | ||||| || || || || ||||| Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| ||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTG 29328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267164865434756