Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq498 105 4e-17
seq2432 87.8 1e-11
seq1193 87.8 1e-11
>seq498
Length=282916
Score = 105 bits (116), Expect = 4e-17
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA 474726
|||||| | ||||| | | || ||||| | | ||| ||| || || |||||| | ||
Sbjct 131307 ATTTCTGCGATGGTGCTCGGAAAGATGAAGGAGATCGCAGAG-TCCTACCTTGGAAAGGA 131365
Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786
||| | | || || | ||||| || |||||||| ||||| | || || ||||| ||
Sbjct 131366 AGTGAAGCACGCTGTTGTCACTGTCCCGGCATATTTCAATGACGCCCAGCGACAAGCCAC 131425
Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846
|| || || |||| || || |||||||| ||| | || ||||| || ||||| |||||
Sbjct 131426 AAAGGACGCCGGAACCATCGCCGGTCTTAACGTTGTCCGCATTATAAACGAACCCACAGC 131485
Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|||||| | || ||||| || || || ||
Sbjct 131486 AGCCGCTATCGCCTATGGACTCGACAAAAA 131515
>seq2432
Length=89687
Score = 87.8 bits (96), Expect = 1e-11
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| || ||||| || | || || ||||| ||||||||||| |||||||||||||||
Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746
||| ||||| ||| || || || | | ||| ||||| || || || ||
Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197
Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769
||||| ||||||||||| || ||
Sbjct 8198 GTGAGCGTCTTAACGAAGATCTG 8220
>seq1193
Length=173371
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688
||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| || |||||
Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409
Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748
|| ||| ||||| || |||| | | ||||| || || || || |||||
Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349
Query 480749 GAGAGTCTTAACGAAAATTTG 480769
|| ||||| ||||| |||||
Sbjct 29348 CAGTGTCTTCACGAAGATTTG 29328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267164865434756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |