Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2432 93.3 8e-14 >seq2432 Length=89687 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || || || | || ||| || || ||||| |||||||| || ||||| || |||| | Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || ||||| | ||| || || || || || || || ||||||||| Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 193341 GTTTTTACAAATATTTGCATT 193361 ||||| || || ||||||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || ||||| ||||| || | ||| ||||||||||| || || ||||| ||||| || ||| Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | ||| || || || || | || || || || || || || || || || Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| ||||| |||||| Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899388473405040