Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1316 163 3e-34
seq4254 132 6e-25
seq1784 131 2e-24
seq1953 123 3e-22
seq168 123 3e-22
seq3103 111 2e-18
seq395 109 7e-18
seq3 102 1e-15
>seq1316
Length=159172
Score = 163 bits (180), Expect = 3e-34
Identities = 153/195 (78%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||| ||||||||||||||| | |||||| |||||| | ||||| ||| ||
Sbjct 35420 AGAAACGCACCGACGACATCCCCAGCTGGGACGTGGAGTTCCTGAAGGTCGACCAGGGCA 35479
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| || || ||| ||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 35480 CGCTGTTCGAGCTGATCCTCGCCGCGAACTACCTCGACATCAAGGGACTGCTCGACGTCA 35539
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | ||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 35540 CCTGCAAGACGGTGGCCAACATGATCAAGGGCAAAACTCCCGAGGAGATCCGTCGCACCT 35599
Query 1592286 TTAACATCAAGTACG 1592300
| ||||||||| |||
Sbjct 35600 TCAACATCAAGAACG 35614
>seq4254
Length=35462
Score = 132 bits (146), Expect = 6e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| ||||| ||| ||| ||||| ||||| || ||||| |||||||| | ||
Sbjct 32401 GCTTGGCGAGTTCACCGGGCAGAATCAGACGCACAGCCGTCTGAATCTCGCGGGACGAGA 32460
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| ||||||||| | |||||||| || || |||| | ||||||| |||| |
Sbjct 32461 TCGTCGAGCGCTTGTTGTACTGCGCCAGGCGAGACGCTTCGGCGGCGATGCGTTCGAATA 32520
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||| || |||||||||| ||||||| ||| |||| ||| ||| || |
Sbjct 32521 CGTCGTTGACGAAGGAGTTCATGATGGACATCGCTTTGGACGAGACGCCGGTGTCCGGAT 32580
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| ||||||||||| || |||||||
Sbjct 32581 GGACCTGCTTGAGGACGCGGTAGATG 32606
>seq1784
Length=122469
Score = 131 bits (144), Expect = 2e-24
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || ||| | | ||| || || ||||| |||||||| ||||| | ||
Sbjct 66559 GCTTGGCGAGCTCTCCGGGAAGGATGAGCCGGACGGCCGTCTGGATTTCGCGAGATGAGA 66618
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| |||||||| |||| || ||||| ||| || | | ||||||| |||| |
Sbjct 66619 TCGTCGATCGCTTGTTGTAGTGGGCGAGACGCGAGGCTTCAGCGGCGATGCGCTCGAAGA 66678
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| || ||||||||||||| |||||||| ||| |||| || ||||||||
Sbjct 66679 CGTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 66738
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
| |||||||| ||||| ||||||| | ||||||
Sbjct 66739 GGACCTGCTTCAGCACACGGTAGATGTAGACCGAGTA 66775
>seq1953
Length=113096
Score = 123 bits (136), Expect = 3e-22
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || ||| | | ||| || || ||||| |||||||| ||||| | ||
Sbjct 112351 GCTTGGCGAGCTCTCCGGGAAGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGA 112292
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| |||||||| |||| || ||||| ||| |||| ||||||| |||| |
Sbjct 112291 TCGTCGACCGCTTGTTGTAGTGGGCGAGACGCGAGGCTTCGGCAGCGATGCGCTCGAAGA 112232
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| || ||||||||||||| |||||| | ||| |||| || ||||||||
Sbjct 112231 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGT 112172
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||| ||||| |||||||
Sbjct 112171 GGACCTGCTTCAGCACACGGTAGATG 112146
>seq168
Length=413542
Score = 123 bits (136), Expect = 3e-22
Identities = 158/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405
|||| || || ||| | | ||| || || ||||| |||||||| ||||| || |||||
Sbjct 34232 TGGCGAGCTCTCCGGGAAGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGTTGAGATCG 34291
Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465
| |||||||| |||| || ||||| ||| | | ||||||| |||| | ||
Sbjct 34292 TCGATCGCTTGTTGTAGTGGGCGAGACGCGAGGCTTGAGCAGCGATGCGCTCGAAGACGT 34351
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525
|||| || ||||||||||||| |||||||| ||| |||| || ||||||||| |
Sbjct 34352 CGTTCACGAACGAGTTCATGATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTGGA 34411
Query 1254526 CCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559
||||||| ||||| ||||||| | ||| |||||
Sbjct 34412 CCTGCTTCAGCACACGGTAGATGTA-GACAGAGTA 34445
>seq3103
Length=64818
Score = 111 bits (122), Expect = 2e-18
Identities = 146/196 (74%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424
||| || || ||||| |||||||| ||||| | |||||| |||||||| ||||
Sbjct 17999 GATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGA-CGCTTGTTGTAGTG 18057
Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484
|| ||||| | || |||| | |||||| |||| | |||||| || |||||||||||
Sbjct 18058 GGCGAGACG-CGAGCTTCGGCAC-GATGCGCTCGAAGACGTCGTTCACGAACGAGTTCAT 18115
Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| ||| |||| || ||||||||| |||||||| ||||| |||
Sbjct 18116 GATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCACACGGTA 18175
Query 1254545 GATGAACGAC-GAGTA 1254559
|||| | ||| |||||
Sbjct 18176 GATGTA-GACGGAGTA 18190
>seq395
Length=310897
Score = 109 bits (120), Expect = 7e-18
Identities = 146/198 (74%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTT-GTTCGAGT 1254423
||| || || ||||| |||||||| ||||| | |||||| ||||| ||| |||
Sbjct 4313 GATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTTGTTGTAGT 4254
Query 1254424 GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATGTCGTTGACAAACGAGTTC 1254482
| || ||||| | ||| |||| ||||||| |||| | |||||| || |||||||||
Sbjct 4253 GGGCGAGACGCCAGGCTTCGGCAGCGATGCGCTCGAGAGACGTCGTTCACGAACGAGTTC 4194
Query 1254483 ATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1254542
|||| |||||| | ||| |||| || ||||||||| |||||||| ||||| |
Sbjct 4193 ATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCACACGG 4134
Query 1254543 TAGATGAACGAC-GAGTA 1254559
|||||| | ||| |||||
Sbjct 4133 TAGATGTA-GACGGAGTA 4117
>seq3
Length=1029188
Score = 102 bits (112), Expect = 1e-15
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
||||| || || || || |||| ||| |||| || ||||| || | || ||||||||
Sbjct 37025 TGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCGTTGGAG 37084
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||| ||||| || | | || | ||||| | |||||| || | |||
Sbjct 37085 GTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGATTTTGTGCACGTTCAGGCCA 37144
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || || || ||| ||||| || || || ||||| |||||||||||||||||| ||
Sbjct 37145 ATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGATGCCCGCG 37204
Query 1630246 ATCGAG---TCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283
|||||| |||||| | ||| || || |||||||| ||
Sbjct 37205 ATCGAGTCATCGGCCAT--TGT-CAGCAGGAAGCACGATGA 37242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105198616441099
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |