Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1316 163 3e-34 seq4254 132 6e-25 seq1784 131 2e-24 seq1953 123 3e-22 seq168 123 3e-22 seq3103 111 2e-18 seq395 109 7e-18 seq3 102 1e-15 >seq1316 Length=159172 Score = 163 bits (180), Expect = 3e-34 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||| ||||||||||||||| | |||||| |||||| | ||||| ||| || Sbjct 35420 AGAAACGCACCGACGACATCCCCAGCTGGGACGTGGAGTTCCTGAAGGTCGACCAGGGCA 35479 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| ||||||||||||| |||||||||||||||||| |||||||| | Sbjct 35480 CGCTGTTCGAGCTGATCCTCGCCGCGAACTACCTCGACATCAAGGGACTGCTCGACGTCA 35539 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | ||||||||||||||||||||||| | |||||||||||||| |||| Sbjct 35540 CCTGCAAGACGGTGGCCAACATGATCAAGGGCAAAACTCCCGAGGAGATCCGTCGCACCT 35599 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 35600 TCAACATCAAGAACG 35614 >seq4254 Length=35462 Score = 132 bits (146), Expect = 6e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| ||| ||||| ||||| || ||||| |||||||| | || Sbjct 32401 GCTTGGCGAGTTCACCGGGCAGAATCAGACGCACAGCCGTCTGAATCTCGCGGGACGAGA 32460 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| | |||||||| || || |||| | ||||||| |||| | Sbjct 32461 TCGTCGAGCGCTTGTTGTACTGCGCCAGGCGAGACGCTTCGGCGGCGATGCGTTCGAATA 32520 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||||| ||| |||| ||| ||| || | Sbjct 32521 CGTCGTTGACGAAGGAGTTCATGATGGACATCGCTTTGGACGAGACGCCGGTGTCCGGAT 32580 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||| || ||||||| Sbjct 32581 GGACCTGCTTGAGGACGCGGTAGATG 32606 >seq1784 Length=122469 Score = 131 bits (144), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| || || ||||| |||||||| ||||| | || Sbjct 66559 GCTTGGCGAGCTCTCCGGGAAGGATGAGCCGGACGGCCGTCTGGATTTCGCGAGATGAGA 66618 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| ||| || | | ||||||| |||| | Sbjct 66619 TCGTCGATCGCTTGTTGTAGTGGGCGAGACGCGAGGCTTCAGCGGCGATGCGCTCGAAGA 66678 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||||| ||| |||| || |||||||| Sbjct 66679 CGTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 66738 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| ||||| ||||||| | |||||| Sbjct 66739 GGACCTGCTTCAGCACACGGTAGATGTAGACCGAGTA 66775 >seq1953 Length=113096 Score = 123 bits (136), Expect = 3e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| || || ||||| |||||||| ||||| | || Sbjct 112351 GCTTGGCGAGCTCTCCGGGAAGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGA 112292 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| ||| |||| ||||||| |||| | Sbjct 112291 TCGTCGACCGCTTGTTGTAGTGGGCGAGACGCGAGGCTTCGGCAGCGATGCGCTCGAAGA 112232 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | ||| |||| || |||||||| Sbjct 112231 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGT 112172 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||| ||||||| Sbjct 112171 GGACCTGCTTCAGCACACGGTAGATG 112146 >seq168 Length=413542 Score = 123 bits (136), Expect = 3e-22 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| || || ||| | | ||| || || ||||| |||||||| ||||| || ||||| Sbjct 34232 TGGCGAGCTCTCCGGGAAGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGTTGAGATCG 34291 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| || ||||| ||| | | ||||||| |||| | || Sbjct 34292 TCGATCGCTTGTTGTAGTGGGCGAGACGCGAGGCTTGAGCAGCGATGCGCTCGAAGACGT 34351 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || ||||||||||||| |||||||| ||| |||| || ||||||||| | Sbjct 34352 CGTTCACGAACGAGTTCATGATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTGGA 34411 Query 1254526 CCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 ||||||| ||||| ||||||| | ||| ||||| Sbjct 34412 CCTGCTTCAGCACACGGTAGATGTA-GACAGAGTA 34445 >seq3103 Length=64818 Score = 111 bits (122), Expect = 2e-18 Identities = 146/196 (74%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| || || ||||| |||||||| ||||| | |||||| |||||||| |||| Sbjct 17999 GATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGA-CGCTTGTTGTAGTG 18057 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 || ||||| | || |||| | |||||| |||| | |||||| || ||||||||||| Sbjct 18058 GGCGAGACG-CGAGCTTCGGCAC-GATGCGCTCGAAGACGTCGTTCACGAACGAGTTCAT 18115 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| |||| || ||||||||| |||||||| ||||| ||| Sbjct 18116 GATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCACACGGTA 18175 Query 1254545 GATGAACGAC-GAGTA 1254559 |||| | ||| ||||| Sbjct 18176 GATGTA-GACGGAGTA 18190 >seq395 Length=310897 Score = 109 bits (120), Expect = 7e-18 Identities = 146/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTT-GTTCGAGT 1254423 ||| || || ||||| |||||||| ||||| | |||||| ||||| ||| ||| Sbjct 4313 GATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTTGTTGTAGT 4254 Query 1254424 GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATGTCGTTGACAAACGAGTTC 1254482 | || ||||| | ||| |||| ||||||| |||| | |||||| || ||||||||| Sbjct 4253 GGGCGAGACGCCAGGCTTCGGCAGCGATGCGCTCGAGAGACGTCGTTCACGAACGAGTTC 4194 Query 1254483 ATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||| | ||| |||| || ||||||||| |||||||| ||||| | Sbjct 4193 ATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCACACGG 4134 Query 1254543 TAGATGAACGAC-GAGTA 1254559 |||||| | ||| ||||| Sbjct 4133 TAGATGTA-GACGGAGTA 4117 >seq3 Length=1029188 Score = 102 bits (112), Expect = 1e-15 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| || || || || |||| ||| |||| || ||||| || | || |||||||| Sbjct 37025 TGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCGTTGGAG 37084 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| ||||| || | | || | ||||| | |||||| || | ||| Sbjct 37085 GTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGATTTTGTGCACGTTCAGGCCA 37144 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || ||| ||||| || || || ||||| |||||||||||||||||| || Sbjct 37145 ATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGATGCCCGCG 37204 Query 1630246 ATCGAG---TCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283 |||||| |||||| | ||| || || |||||||| || Sbjct 37205 ATCGAGTCATCGGCCAT--TGT-CAGCAGGAAGCACGATGA 37242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105198616441099