Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2432 105 6e-18 seq153 104 2e-17 seq12137 91.5 1e-13 seq1193 91.5 1e-13 >seq2432 Length=89687 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| ||||| || || || || || || || ||||| || ||| | Sbjct 8223 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCA 8164 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||| |||||||| || ||||| ||||| ||||| Sbjct 8163 GACACCATCGAAAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 8104 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 || || ||||||||||| || || || Sbjct 8103 CAGCGATTGATCTTTGCGGGTAAGCA 8078 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||||||||| || || || ||||| ||||| || || || || Sbjct 8533 ATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTCC 8474 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||||| |||||||| |||||||| ||||| || || Sbjct 8473 GACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 8414 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||||| || || Sbjct 8413 CAGCGACTGATCTTCGCAGG 8394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || || || || |||||| | Sbjct 6463 ATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTCA 6404 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || ||||| ||||| Sbjct 6403 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCAG 6344 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||| || ||||| || Sbjct 6343 CAGCGTTTGATTTTCGCCGGTAA 6321 >seq153 Length=425603 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || | || || || || |||| | Sbjct 198092 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATCT 198033 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| |||||||| || || || || Sbjct 198032 GAGACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 197973 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATAA 24882 |||||| | |||||||||| |||||||| ||||| | || | || | ||||| ||||| Sbjct 197972 CAACGTCTCATCTTTGCCGACAAACAGCTCGAGGA-TGGACACACTCTTTCAGACTATAA 197914 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || || || || | ||| || ||||| Sbjct 197913 CATCCAGAAAGAGTCCATACTGCATCTGGTG 197883 >seq12137 Length=1209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| ||||| || || || || || || || ||||| || ||| | Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || |||||||| || ||||| ||||| ||||| Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 1018 CAACGACTGATCTTTGCAGG 999 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || | || || ||||| || Sbjct 830 ATGCAGATATTCGTAAAGACTCTTACTGGAAAGACAATCACCTTGGAGGTCGAAGCTTCC 771 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||||||||||| ||||| || || || |||||| Sbjct 770 GATACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAA 711 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||||||||| Sbjct 710 CAGCGATTGATCTTTGCCGG 691 >seq1193 Length=173371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || || || || |||||| | Sbjct 29325 ATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTCT 29384 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || ||||| ||||| Sbjct 29385 GACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAG 29444 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| ||||| || || Sbjct 29445 CAACGTCTGATTTTTGCTGGTAA 29467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || | ||||| ||||| || Sbjct 29030 ATGCAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATCC 29089 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || ||||| || || Sbjct 29090 GACACGATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAG 29149 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||| ||||| Sbjct 29150 CAGCGACTCATCTTCGCCGG 29169 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || || | |||||||||||| || Sbjct 29922 ATGCAAATCTTCGTGAAGACCTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTCC 29981 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| |||||||||||||| ||||| || ||||| ||||| Sbjct 29982 GATACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 30041 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||| | | ||||| ||||| || Sbjct 30042 CAAAGACTTATCTTCGCCGGTAA 30064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449764615893160