Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2432 105 6e-18
seq153 104 2e-17
seq12137 91.5 1e-13
seq1193 91.5 1e-13
>seq2432
Length=89687
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| ||||| || || || || || || || ||||| || ||| |
Sbjct 8223 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCA 8164
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||| |||||||| || ||||| ||||| |||||
Sbjct 8163 GACACCATCGAAAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 8104
Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849
|| || ||||||||||| || || ||
Sbjct 8103 CAGCGATTGATCTTTGCGGGTAAGCA 8078
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| ||||||||||||| || || || ||||| ||||| || || || ||
Sbjct 8533 ATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTCC 8474
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || ||| ||||| |||||||| |||||||| ||||| || ||
Sbjct 8473 GACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 8414
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || ||||||| || ||
Sbjct 8413 CAGCGACTGATCTTCGCAGG 8394
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||||| || || || || || || || || || |||||| |
Sbjct 6463 ATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTCA 6404
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||||||||| || || ||||| |||||
Sbjct 6403 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCAG 6344
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|| |||||||| || ||||| ||
Sbjct 6343 CAGCGTTTGATTTTCGCCGGTAA 6321
>seq153
Length=425603
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||| | ||||| || || | || || || || |||| |
Sbjct 198092 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATCT 198033
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| |||||||| || || || ||
Sbjct 198032 GAGACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 197973
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATAA 24882
|||||| | |||||||||| |||||||| ||||| | || | || | ||||| |||||
Sbjct 197972 CAACGTCTCATCTTTGCCGACAAACAGCTCGAGGA-TGGACACACTCTTTCAGACTATAA 197914
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913
||| || || || || | ||| || |||||
Sbjct 197913 CATCCAGAAAGAGTCCATACTGCATCTGGTG 197883
>seq12137
Length=1209
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| ||||| || || || || || || || ||||| || ||| |
Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || || |||||||| || ||||| ||||| |||||
Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||| |||||||||| ||
Sbjct 1018 CAACGACTGATCTTTGCAGG 999
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || || || || || || || | || || ||||| ||
Sbjct 830 ATGCAGATATTCGTAAAGACTCTTACTGGAAAGACAATCACCTTGGAGGTCGAAGCTTCC 771
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | || || |||||||||||||| ||||| || || || ||||||
Sbjct 770 GATACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAA 711
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || ||||||||||||||
Sbjct 710 CAGCGATTGATCTTTGCCGG 691
>seq1193
Length=173371
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || ||||| || || || || || || || |||||| |
Sbjct 29325 ATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTCT 29384
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||||||||| || ||||| |||||
Sbjct 29385 GACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAG 29444
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 29445 CAACGTCTGATTTTTGCTGGTAA 29467
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||||| || || || || || || | ||||| ||||| ||
Sbjct 29030 ATGCAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATCC 29089
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || ||||| || ||
Sbjct 29090 GACACGATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAG 29149
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || | ||||| |||||
Sbjct 29150 CAGCGACTCATCTTCGCCGG 29169
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || | || || || || || || | |||||||||||| ||
Sbjct 29922 ATGCAAATCTTCGTGAAGACCTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTCC 29981
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct 29982 GATACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 30041
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||| | | ||||| ||||| ||
Sbjct 30042 CAAAGACTTATCTTCGCCGGTAA 30064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449764615893160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |