Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq4254 203 5e-46
seq1784 174 2e-37
seq55 156 7e-32
seq1953 154 2e-31
seq128 152 8e-31
seq3103 150 3e-30
seq1316 140 5e-27
seq537 127 3e-23
seq606 122 1e-21
seq395 114 2e-19
seq3 111 2e-18
seq168 107 3e-17
>seq4254
Length=35462
Score = 203 bits (224), Expect = 5e-46
Identities = 188/236 (80%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| |||
Sbjct 32362 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGTTCACCGGGCA 32421
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| ||||| || ||||| |||||||||| |||||| ||||||||| || |
Sbjct 32422 GAATCAGACGCACAGCCGTCTGAATCTCGCGGGACGAGATCGTCGAGCGCTTGTT-GTAC 32480
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
|||||||||| || |||| | ||||||| |||| | ||||||||| || ||||||
Sbjct 32481 TGCGCCAGGCGAGACGCTTCGGCGGCGATGCGTTCGAATACGTCGTTGACGAAGGAGTTC 32540
Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||| ||||||| |||| |||| ||| ||| || || ||||||||||| ||
Sbjct 32541 ATGATGGACATCGCTTTGGACGAGACGCCGGTGTCCGGATGGACCTGCTTGAGGAC 32596
>seq1784
Length=122469
Score = 174 bits (192), Expect = 2e-37
Identities = 182/237 (77%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | |
Sbjct 66520 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCGGGAA 66579
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
||| || || ||||| |||||||| ||||| | |||||| ||||||| ||||
Sbjct 66580 GGATGAGCCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGATCGCTTGTTGTAGT 66639
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || || ||| || | | ||||||| |||| | |||||| || ||||||||
Sbjct 66640 GGGCG--AGACGCGAGGCTTCAGCGGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 66697
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||||| || |||| || ||||||||| |||||||| |||||
Sbjct 66698 CATGATCGACATCGCCTTCGACGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCAC 66754
>seq55
Length=596864
Score = 156 bits (172), Expect = 7e-32
Identities = 176/233 (76%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||||||| |||| ||||| |||||||||||| | | ||||| ||| |||
Sbjct 284425 TGTACTTGGTGACGGCCCTGGTGCCCTCGGAGACGGCGTGCTTTTCGAGTTCACCGGGCA 284484
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || ||||| || ||||| ||||||||| |||||| ||||||||| || |
Sbjct 284485 GAACGAGACGCACAGCAGTCTGAATCTCGCGGCACGAGATCGTCGAGCGCTTGTT-GTAC 284543
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
||||| |||| || |||| | |||| || |||| | ||||||||| || |||||
Sbjct 284544 TGCGCCTGGCGAGACGCTTCGGCGGCGATACGTTCGAATACGTCGTTGACGAAGCAGTTC 284603
Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAG 1485701
||||| ||||||| ||| |||| ||| |||||| || ||| |||||||
Sbjct 284604 ATGATAGACATCGCTTTAGACGAGACGCCGGTGTCGGGATGAACCAGCTTGAG 284656
>seq1953
Length=113096
Score = 154 bits (170), Expect = 2e-31
Identities = 179/238 (75%), Gaps = 5/238 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGG-CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528
|||| |||||||||| ||||||| ||||| || ||||||||| |||| || || ||| |
Sbjct 112391 TGTATTTGGTGACGGGCCTTGGTGCCCTCAGATACGGCGTGCTTGGCGAGCTCTCCGGGA 112332
Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AG 1485586
| ||| || || ||||| |||||||| ||||| | |||||| |||||||| ||
Sbjct 112331 AGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTGTTGTAG 112272
Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646
|| ||| | ||| ||| |||| ||||||| |||| | |||||| || |||||||
Sbjct 112271 TGGGCGAGACGCGA--GGCTTCGGCAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGT 112214
Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||||||| | || |||| || ||||||||| |||||||| |||||
Sbjct 112213 TCATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCAC 112156
>seq128
Length=455210
Score = 152 bits (168), Expect = 8e-31
Identities = 154/198 (78%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||| | ||||| |||| ||||||| |||| ||||| ||| |||
Sbjct 216255 TGTACTTGGTGACGGCCTTGTTGCCCTCGGAGATGGCGTGCTTGGCGAGTTCACCGGGCA 216196
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| ||||| || ||||| ||||||||| |||||| ||| ||||| || |
Sbjct 216195 AAATCAGACGCACAGCCGTCTGAATCTCGCGGAACGAGATCGTCGAGCGTTTGTT-GTAC 216137
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
|||||| || || |||| | ||||||| |||| | ||||||||| || ||||||
Sbjct 216136 TGCGCCAACCGAGACGCTTCGGCGGCGATGCGTTCGAATACGTCGTTGACGAAGGAGTTC 216077
Query 1485649 ATGATCGACATCGATTTG 1485666
|||| ||||||| ||||
Sbjct 216076 GTGATGGACATCGCTTTG 216059
>seq3103
Length=64818
Score = 150 bits (166), Expect = 3e-30
Identities = 179/237 (76%), Gaps = 8/237 (3%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| |||| || || | | | |
Sbjct 17939 TGTACTTGGTGACGGCCTTGGTGCCCTCAGATACGGCGTGCTTGGCGAGCTCTCGG-GAA 17997
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
||| || || ||||| |||||||| ||||| | |||||| |||||||| |||
Sbjct 17998 GGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGA-CGCTTGTTGTAGT 18056
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| | ||| || |||| | |||||| |||| | |||||| || ||||||||
Sbjct 18057 GGGCGAGACGCGA---GCTTCGGCAC-GATGCGCTCGAAGACGTCGTTCACGAACGAGTT 18112
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||||| || |||| || ||||||||| |||||||| |||||
Sbjct 18113 CATGATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCAC 18169
>seq1316
Length=159172
Score = 140 bits (154), Expect = 5e-27
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 2035565 CGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACC 2035624
||| || |||||||||||||| | |||||| || || ||||||||||
Sbjct 35418 CGAGAAACGCACCGACGACATCCCCAGCTGGGACGTGGAGTTCCTGAAGGTCGACCAGGG 35477
Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684
||| || || ||| ||||||||||||| |||||||||||||||||| || ||||| |
Sbjct 35478 CACGCTGTTCGAGCTGATCCTCGCCGCGAACTACCTCGACATCAAGGGACTGCTCGACGT 35537
Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGAC 2035744
|||||||| ||||||||| | ||||||||||| | |||||||| ||||| ||
Sbjct 35538 CACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAAACTCCCGAGGAGATCCGTCGCAC 35597
Query 2035745 CTTTAACATCAAGTACG 2035761
||| ||||||||| |||
Sbjct 35598 CTTCAACATCAAGAACG 35614
>seq537
Length=272942
Score = 127 bits (140), Expect = 3e-23
Identities = 145/191 (76%), Gaps = 8/191 (4%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||| ||| |||| ||| | |||
Sbjct 115299 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCAAGTCCACCG---- 115354
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| ||| ||||| || ||||| |||||||||| ||||| | |||||| || |
Sbjct 115355 -GA-CAGACGCACAGCAGTCTGAATCTCGCGGGACGAAATCGTCGAACTCTTGTT-GTAC 115411
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
|||||| ||| || || | | |||| || |||| ||||||||||| ||||| |||
Sbjct 115412 AGCGCCAAGCGAAACGCTTCAGCGGCGATACGTTCGAATATGTCGTTGACGAACGAATTC 115471
Query 1485649 ATGATCGACAT 1485659
||| |||||||
Sbjct 115472 ATGGTCGACAT 115482
>seq606
Length=258679
Score = 122 bits (134), Expect = 1e-21
Identities = 171/237 (72%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| |||| || | | | | |
Sbjct 113069 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCGAG--CTCTGGGAA 113126
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT--GTTAGT 1485587
||| || || |||||||||||||| ||||| | |||||| ||||| ||||
Sbjct 113127 GGATGAGTCGGACGGCGGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTACTGTAGT 113186
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||| || || ||| | ||||||| |||| | |||||| || ||||||||
Sbjct 113187 AGGCG--AGACGCGAGGCTATAGCAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 113244
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||||| || |||| || |||| ||| ||||||| |||||
Sbjct 113245 CATGATCGACATCGCCTTCGATGAGACACCGGTGTCGTGGTAGTCCTGCTTCAGCAC 113301
>seq395
Length=310897
Score = 114 bits (126), Expect = 2e-19
Identities = 179/246 (73%), Gaps = 14/246 (6%)
Strand=Plus/Minus
Query 1485470 TGTACTT-GGTGACGGCCTTGGTACCCTCTGA---GACGGCGTGC-CTGGCCAGTTCGCC 1485524
||||||| ||||||||| ||||| || || | |||||||||| ||||| || || ||
Sbjct 4380 TGTACTTTGGTGACGGC-TTGGTGGCCGCTCAATAGACGGCGTGCTCTGGCGAGCTCTCC 4322
Query 1485525 GCGCATGA--TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT- 1485581
| | || | || || ||||| |||||||| ||||| | |||||| |||||
Sbjct 4321 CGGAAGGAGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTT 4262
Query 1485582 GTT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATGTCGTTGAC 1485638
||| |||| ||| || || | ||| |||| ||||||| |||| | |||||| ||
Sbjct 4261 GTTGTAGTGGGCG--AGACGCCAGGCTTCGGCAGCGATGCGCTCGAGAGACGTCGTTCAC 4204
Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698
|||||||||||||||||||| | || |||| || ||||||||| ||||||||
Sbjct 4203 GAACGAGTTCATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTT 4144
Query 1485699 GAGCAC 1485704
|||||
Sbjct 4143 CAGCAC 4138
>seq3
Length=1029188
Score = 111 bits (122), Expect = 2e-18
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
||||| ||||| || || |||| ||| |||| || ||||| || | ||| ||||||||
Sbjct 37025 TGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCGTTGGAG 37084
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
|||||| ||||| || | | || | ||||| | |||||| || | |||
Sbjct 37085 GTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGATTTTGTGCACGTTCAGGCCA 37144
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
|| || || || ||| ||||| || || || | ||||||||| |||||||||||| ||
Sbjct 37145 ATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGATGCCCGCG 37204
Query 2073721 ATCGAG---TCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758
|||||| |||||| | ||| || ||| |||||||| ||
Sbjct 37205 ATCGAGTCATCGGCCAT--TGT-CAGCAGGAAGCACGATGA 37242
>seq168
Length=413542
Score = 107 bits (118), Expect = 3e-17
Identities = 142/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 1485512 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCG 1485571
|||| || || ||| | | ||| || || ||||| |||||||| ||||| || |||||
Sbjct 34232 TGGCGAGCTCTCCGGGAAGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGTTGAGATCG 34291
Query 1485572 TGTTGCGCTTGTT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCAT 1485629
| |||||||| |||| ||| | ||| ||| | | ||||||| |||| |
Sbjct 34292 TCGATCGCTTGTTGTAGTGGGCGAGACGCGA--GGCTTGAGCAGCGATGCGCTCGAAGAC 34349
Query 1485630 GTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTG 1485689
|||||| || |||||||||||||||||||||| || |||| || |||||||||
Sbjct 34350 GTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTG 34409
Query 1485690 CACCTGCTTGAGCAC 1485704
|||||||| |||||
Sbjct 34410 GACCTGCTTCAGCAC 34424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7913730960756033
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