Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4254 203 5e-46 seq1784 174 2e-37 seq55 156 7e-32 seq1953 154 2e-31 seq128 152 8e-31 seq3103 150 3e-30 seq1316 140 5e-27 seq537 127 3e-23 seq606 122 1e-21 seq395 114 2e-19 seq3 111 2e-18 seq168 107 3e-17 >seq4254 Length=35462 Score = 203 bits (224), Expect = 5e-46 Identities = 188/236 (80%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| ||| Sbjct 32362 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGTTCACCGGGCA 32421 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| ||||| || ||||| |||||||||| |||||| ||||||||| || | Sbjct 32422 GAATCAGACGCACAGCCGTCTGAATCTCGCGGGACGAGATCGTCGAGCGCTTGTT-GTAC 32480 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| || |||| | ||||||| |||| | ||||||||| || |||||| Sbjct 32481 TGCGCCAGGCGAGACGCTTCGGCGGCGATGCGTTCGAATACGTCGTTGACGAAGGAGTTC 32540 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||||| |||| |||| ||| ||| || || ||||||||||| || Sbjct 32541 ATGATGGACATCGCTTTGGACGAGACGCCGGTGTCCGGATGGACCTGCTTGAGGAC 32596 >seq1784 Length=122469 Score = 174 bits (192), Expect = 2e-37 Identities = 182/237 (77%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 66520 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCGGGAA 66579 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| || || ||||| |||||||| ||||| | |||||| ||||||| |||| Sbjct 66580 GGATGAGCCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGATCGCTTGTTGTAGT 66639 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||| || | | ||||||| |||| | |||||| || |||||||| Sbjct 66640 GGGCG--AGACGCGAGGCTTCAGCGGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 66697 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| || |||| || ||||||||| |||||||| ||||| Sbjct 66698 CATGATCGACATCGCCTTCGACGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCAC 66754 >seq55 Length=596864 Score = 156 bits (172), Expect = 7e-32 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||| |||| ||||| |||||||||||| | | ||||| ||| ||| Sbjct 284425 TGTACTTGGTGACGGCCCTGGTGCCCTCGGAGACGGCGTGCTTTTCGAGTTCACCGGGCA 284484 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||| ||||||||| |||||| ||||||||| || | Sbjct 284485 GAACGAGACGCACAGCAGTCTGAATCTCGCGGCACGAGATCGTCGAGCGCTTGTT-GTAC 284543 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||| |||| || |||| | |||| || |||| | ||||||||| || ||||| Sbjct 284544 TGCGCCTGGCGAGACGCTTCGGCGGCGATACGTTCGAATACGTCGTTGACGAAGCAGTTC 284603 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAG 1485701 ||||| ||||||| ||| |||| ||| |||||| || ||| ||||||| Sbjct 284604 ATGATAGACATCGCTTTAGACGAGACGCCGGTGTCGGGATGAACCAGCTTGAG 284656 >seq1953 Length=113096 Score = 154 bits (170), Expect = 2e-31 Identities = 179/238 (75%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGG-CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 |||| |||||||||| ||||||| ||||| || ||||||||| |||| || || ||| | Sbjct 112391 TGTATTTGGTGACGGGCCTTGGTGCCCTCAGATACGGCGTGCTTGGCGAGCTCTCCGGGA 112332 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AG 1485586 | ||| || || ||||| |||||||| ||||| | |||||| |||||||| || Sbjct 112331 AGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTGTTGTAG 112272 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || ||| | ||| ||| |||| ||||||| |||| | |||||| || ||||||| Sbjct 112271 TGGGCGAGACGCGA--GGCTTCGGCAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGT 112214 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||||| | || |||| || ||||||||| |||||||| ||||| Sbjct 112213 TCATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCAC 112156 >seq128 Length=455210 Score = 152 bits (168), Expect = 8e-31 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||| | ||||| |||| ||||||| |||| ||||| ||| ||| Sbjct 216255 TGTACTTGGTGACGGCCTTGTTGCCCTCGGAGATGGCGTGCTTGGCGAGTTCACCGGGCA 216196 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| ||||| || ||||| ||||||||| |||||| ||| ||||| || | Sbjct 216195 AAATCAGACGCACAGCCGTCTGAATCTCGCGGAACGAGATCGTCGAGCGTTTGTT-GTAC 216137 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||| || || |||| | ||||||| |||| | ||||||||| || |||||| Sbjct 216136 TGCGCCAACCGAGACGCTTCGGCGGCGATGCGTTCGAATACGTCGTTGACGAAGGAGTTC 216077 Query 1485649 ATGATCGACATCGATTTG 1485666 |||| ||||||| |||| Sbjct 216076 GTGATGGACATCGCTTTG 216059 >seq3103 Length=64818 Score = 150 bits (166), Expect = 3e-30 Identities = 179/237 (76%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| || || | | | | Sbjct 17939 TGTACTTGGTGACGGCCTTGGTGCCCTCAGATACGGCGTGCTTGGCGAGCTCTCGG-GAA 17997 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| || || ||||| |||||||| ||||| | |||||| |||||||| ||| Sbjct 17998 GGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGA-CGCTTGTTGTAGT 18056 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | ||| || |||| | |||||| |||| | |||||| || |||||||| Sbjct 18057 GGGCGAGACGCGA---GCTTCGGCAC-GATGCGCTCGAAGACGTCGTTCACGAACGAGTT 18112 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| || |||| || ||||||||| |||||||| ||||| Sbjct 18113 CATGATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTTCAGCAC 18169 >seq1316 Length=159172 Score = 140 bits (154), Expect = 5e-27 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 2035565 CGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACC 2035624 ||| || |||||||||||||| | |||||| || || |||||||||| Sbjct 35418 CGAGAAACGCACCGACGACATCCCCAGCTGGGACGTGGAGTTCCTGAAGGTCGACCAGGG 35477 Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684 ||| || || ||| ||||||||||||| |||||||||||||||||| || ||||| | Sbjct 35478 CACGCTGTTCGAGCTGATCCTCGCCGCGAACTACCTCGACATCAAGGGACTGCTCGACGT 35537 Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGAC 2035744 |||||||| ||||||||| | ||||||||||| | |||||||| ||||| || Sbjct 35538 CACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAAACTCCCGAGGAGATCCGTCGCAC 35597 Query 2035745 CTTTAACATCAAGTACG 2035761 ||| ||||||||| ||| Sbjct 35598 CTTCAACATCAAGAACG 35614 >seq537 Length=272942 Score = 127 bits (140), Expect = 3e-23 Identities = 145/191 (76%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||| ||| |||| ||| | ||| Sbjct 115299 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCAAGTCCACCG---- 115354 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| ||||| || ||||| |||||||||| ||||| | |||||| || | Sbjct 115355 -GA-CAGACGCACAGCAGTCTGAATCTCGCGGGACGAAATCGTCGAACTCTTGTT-GTAC 115411 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||| ||| || || | | |||| || |||| ||||||||||| ||||| ||| Sbjct 115412 AGCGCCAAGCGAAACGCTTCAGCGGCGATACGTTCGAATATGTCGTTGACGAACGAATTC 115471 Query 1485649 ATGATCGACAT 1485659 ||| ||||||| Sbjct 115472 ATGGTCGACAT 115482 >seq606 Length=258679 Score = 122 bits (134), Expect = 1e-21 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| || | | | | | Sbjct 113069 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCGAG--CTCTGGGAA 113126 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT--GTTAGT 1485587 ||| || || |||||||||||||| ||||| | |||||| ||||| |||| Sbjct 113127 GGATGAGTCGGACGGCGGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTACTGTAGT 113186 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| || || ||| | ||||||| |||| | |||||| || |||||||| Sbjct 113187 AGGCG--AGACGCGAGGCTATAGCAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 113244 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| || |||| || |||| ||| ||||||| ||||| Sbjct 113245 CATGATCGACATCGCCTTCGATGAGACACCGGTGTCGTGGTAGTCCTGCTTCAGCAC 113301 >seq395 Length=310897 Score = 114 bits (126), Expect = 2e-19 Identities = 179/246 (73%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 1485470 TGTACTT-GGTGACGGCCTTGGTACCCTCTGA---GACGGCGTGC-CTGGCCAGTTCGCC 1485524 ||||||| ||||||||| ||||| || || | |||||||||| ||||| || || || Sbjct 4380 TGTACTTTGGTGACGGC-TTGGTGGCCGCTCAATAGACGGCGTGCTCTGGCGAGCTCTCC 4322 Query 1485525 GCGCATGA--TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT- 1485581 | | || | || || ||||| |||||||| ||||| | |||||| ||||| Sbjct 4321 CGGAAGGAGATGAGTCGGACGGCCGTCTGGATTTCGCGAGATGAGATCGTCGACCGCTTT 4262 Query 1485582 GTT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATGTCGTTGAC 1485638 ||| |||| ||| || || | ||| |||| ||||||| |||| | |||||| || Sbjct 4261 GTTGTAGTGGGCG--AGACGCCAGGCTTCGGCAGCGATGCGCTCGAGAGACGTCGTTCAC 4204 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 |||||||||||||||||||| | || |||| || ||||||||| |||||||| Sbjct 4203 GAACGAGTTCATGATCGACATGGCCTTCGATGAGACACCGGTGTCGGGGTGGACCTGCTT 4144 Query 1485699 GAGCAC 1485704 ||||| Sbjct 4143 CAGCAC 4138 >seq3 Length=1029188 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| ||||| || || |||| ||| |||| || ||||| || | ||| |||||||| Sbjct 37025 TGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCGTTGGAG 37084 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||| ||||| || | | || | ||||| | |||||| || | ||| Sbjct 37085 GTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGATTTTGTGCACGTTCAGGCCA 37144 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || ||| ||||| || || || | ||||||||| |||||||||||| || Sbjct 37145 ATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGATGCCCGCG 37204 Query 2073721 ATCGAG---TCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 |||||| |||||| | ||| || ||| |||||||| || Sbjct 37205 ATCGAGTCATCGGCCAT--TGT-CAGCAGGAAGCACGATGA 37242 >seq168 Length=413542 Score = 107 bits (118), Expect = 3e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 1485512 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCG 1485571 |||| || || ||| | | ||| || || ||||| |||||||| ||||| || ||||| Sbjct 34232 TGGCGAGCTCTCCGGGAAGGATGAGTCGGACGGCCGTCTGGATTTCGCGAGTTGAGATCG 34291 Query 1485572 TGTTGCGCTTGTT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCAT 1485629 | |||||||| |||| ||| | ||| ||| | | ||||||| |||| | Sbjct 34292 TCGATCGCTTGTTGTAGTGGGCGAGACGCGA--GGCTTGAGCAGCGATGCGCTCGAAGAC 34349 Query 1485630 GTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTG 1485689 |||||| || |||||||||||||||||||||| || |||| || ||||||||| Sbjct 34350 GTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGATGAGACACCGGTGTCGGGGTG 34409 Query 1485690 CACCTGCTTGAGCAC 1485704 |||||||| ||||| Sbjct 34410 GACCTGCTTCAGCAC 34424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913730960756033