Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2432 98.7 6e-16 seq12137 91.5 1e-13 seq1193 86.0 4e-12 seq153 86.0 4e-12 seq405 84.2 1e-11 >seq2432 Length=89687 Score = 98.7 bits (108), Expect = 6e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || || ||||||| ||| ||||| ||| | || | ||||||||||| | || Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 ||| |||||| | | || | || ||||||||| || | ||| || |||||||| Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| || |||||||||||| Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCATG 8224 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||||||| ||||| ||| | || | |||||||||||| | || || Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 ||||| || || || | || || || || || | || |||||||| || |||| Sbjct 4563 TTGAC--ATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGA 4620 Query 34956 GGGTCTTTACAAAGATCTGCATG 34978 | |||||||| |||||||||||| Sbjct 4621 GCGTCTTTACGAAGATCTGCATG 4643 >seq12137 Length=1209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||||||||| | ||||| Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 || || || || || | || ||||||||| || | || ||||||||||| |||| Sbjct 1059 TTCAC--ATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGA 1116 Query 34956 GGGTCTTTACAAAGATCTGCATG 34978 | ||||| || |||||||||||| Sbjct 1117 GCGTCTTAACGAAGATCTGCATG 1139 >seq1193 Length=173371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||| ||||| ||||||||| | || | ||||||||||| | || || Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | |||| || || ||||| || | || ||||||||||| || || Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| Sbjct 29049 GTCTTCACAAAGATCTGCAT 29030 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||| ||||||||||||||| | || | || |||||||| | || || Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | || | ||| |||||| || || | ||| |||||||| || || Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||| ||||| Sbjct 31250 CAGTGTCTTCACGAAGATTTGCAT 31227 >seq153 Length=425603 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||||||||| || || || | |||| || || || || |||| || Sbjct 197901 CTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAA 197960 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | || |||||||| | || || || ||| Sbjct 197961 GATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTT 198020 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| ||| || | || || | ||| | |||||||| || | ||||| || Sbjct 198021 CTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCAC 198080 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 198081 GAAGATCTGCAT 198092 >seq405 Length=308142 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||| || |||||| | || | |||||||||||| | || || Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 || || || || |||| || ||| ||||| || | ||| || ||||||||||||| Sbjct 21304 TTCAC--ATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGA 21247 Query 34956 GGGTCTTTACAAAGATCTGCAT 34977 | ||||| || ||||| ||||| Sbjct 21246 GAGTCTTCACGAAGATTTGCAT 21225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325598936047493