Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2432 98.7 6e-16
seq12137 91.5 1e-13
seq1193 86.0 4e-12
seq153 86.0 4e-12
seq405 84.2 1e-11
>seq2432
Length=89687
Score = 98.7 bits (108), Expect = 6e-16
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891
||||| || || ||||||| ||| ||||| ||| | || | ||||||||||| | ||
Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137
Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951
||| |||||| | | || | || ||||||||| || | ||| || ||||||||
Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197
Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| ||||| || ||||||||||||
Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCATG 8224
Score = 82.4 bits (90), Expect = 5e-11
Identities = 105/143 (73%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||||||||| ||||| ||| | || | |||||||||||| | || ||
Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562
Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955
||||| || || || | || || || || || | || |||||||| || ||||
Sbjct 4563 TTGAC--ATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGA 4620
Query 34956 GGGTCTTTACAAAGATCTGCATG 34978
| |||||||| ||||||||||||
Sbjct 4621 GCGTCTTTACGAAGATCTGCATG 4643
>seq12137
Length=1209
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| || ||||||||||||||||| ||| | || | ||||||||||| | |||||
Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058
Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955
|| || || || || | || ||||||||| || | || ||||||||||| ||||
Sbjct 1059 TTCAC--ATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGA 1116
Query 34956 GGGTCTTTACAAAGATCTGCATG 34978
| ||||| || ||||||||||||
Sbjct 1117 GCGTCTTAACGAAGATCTGCATG 1139
>seq1193
Length=173371
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
||||||||||| ||||| ||||||||| | || | ||||||||||| | || ||
Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | |||| || || ||||| || | || ||||||||||| || ||
Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| ||||||||||||||
Sbjct 29049 GTCTTCACAAAGATCTGCAT 29030
Score = 84.2 bits (92), Expect = 1e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893
||| ||||||||||| ||||||||||||||| | || | || |||||||| | || ||
Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311
Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953
|| ||| | || | ||| |||||| || || | ||| |||||||| || ||
Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251
Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| || ||||| |||||
Sbjct 31250 CAGTGTCTTCACGAAGATTTGCAT 31227
>seq153
Length=425603
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| ||||| ||||||||||| || || || | |||| || || || || |||| ||
Sbjct 197901 CTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAA 197960
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || |||||||||||| | || | || |||||||| | || || || |||
Sbjct 197961 GATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTT 198020
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| |||| ||| || | || || | ||| | |||||||| || | ||||| ||
Sbjct 198021 CTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCAC 198080
Query 34966 AAAGATCTGCAT 34977
|||||||||||
Sbjct 198081 GAAGATCTGCAT 198092
>seq405
Length=308142
Score = 84.2 bits (92), Expect = 1e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| || ||||||||||| || |||||| | || | |||||||||||| | || ||
Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305
Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955
|| || || || |||| || ||| ||||| || | ||| || |||||||||||||
Sbjct 21304 TTCAC--ATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGA 21247
Query 34956 GGGTCTTTACAAAGATCTGCAT 34977
| ||||| || ||||| |||||
Sbjct 21246 GAGTCTTCACGAAGATTTGCAT 21225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325598936047493
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |