Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 95.1 9e-14
>seq2969
Length=69424
Score = 95.1 bits (104), Expect = 9e-14
Identities = 459/723 (63%), Gaps = 8/723 (1%)
Strand=Plus/Minus
Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815
|| ||||| ||||| | ||||| || || || || || || || || || | | |
Sbjct 51347 AGGATAGCGGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCGGGGTTGATCGACTTG 51288
Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 281874
|| |||| || || ||| | || || || || | ||| |||||||| ||||| |
Sbjct 51287 TTCAGTTCCTTGCCGGAGAACAGATCGGAGAGCAGCT-TCTGGACCTTAGGGATACGGGT 51229
Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 281934
|||||||| || | || || || |||||||| || |||| || | || |
Sbjct 51228 GGATCCTCCGACCAGGACGATGTCGTGCACCTGGCTCTTGTCCATCTTGGCGTCTCTCAG 51169
Query 281935 AACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTT 281994
|| || ||||| || | | | || | ||| | || || || |||||
Sbjct 51168 CGACTTCTCGACGGGGTCCATGGTGGAGCGGAAGAGGTCAGCGCAGAGCTCCTCGAAACG 51109
Query 281995 AGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 282053
|| | ||||| || | || || ||||| || ||||||| || || | || ||||
Sbjct 51108 GGCACGAGTAAT-GTTAGTGTAGAAGTCAATACCCTCGAACAGCGAGTCGATCTCGATCG 51050
Query 282054 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 282113
|| || | || || || || | ||| || |||||||| || || || | |||| ||
Sbjct 51049 AAGCCTGGGATGACGATGAGAGGGTACGCTTTGCACGTTCGCAGGCGGTGCGGAGTCGTC 50990
Query 282114 GTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC 282171
| | ||| | ||||| | ||| ||| | || | || | |||||| || | ||
Sbjct 50989 GAAGGGCACGAG--GATTGGTGTTCAGATCCTTCTTGTGCTTGCGCTTGAACTCGGCGAC 50932
Query 282172 ACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGT 282231
| | | || | || || || || || || ||||| | | || | ||| | ||
Sbjct 50931 AAAGTGGTTGACCATTCGGTTGTCGAAGTCCTCTCCTCCAAGATGGGTGTCTCCAGCGGT 50872
Query 282232 AGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACC 282291
| | |||| ||| | ||| || || | | || | | ||||| ||| |||||
Sbjct 50871 GGACTTGACTTCGAAGATTCCGTCCTCGATGGTCAGGATGGACACATCGAAGGTACCACC 50812
Query 282292 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGC 282351
|| | ||| || || || || || ||| | || || || ||||| || ||
Sbjct 50811 TCCAAGATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGACCGTAGGC 50752
Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411
| |||||||||||| ||||| || || |||| | ||||| || || || || |||
Sbjct 50751 GATAGCAGCAGCAGTGGGTTCGTTGATGATTCGAAGGACATTCAGGCCGGCGATGGCTCC 50692
Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
||||| || |||||||| | ||||| ||||| || || || || || || | |||||
Sbjct 50691 AGCATCCTTGGTGGCTTGACGCTGTGAGTCGTTGAAGTAGGCCGGTACGGTGACGACGGC 50632
Query 282472 ATC 282474
|||
Sbjct 50631 ATC 50629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739469432232222
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |