Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq153 140 6e-28
seq1193 132 9e-26
seq12137 113 9e-20
seq2432 111 3e-19
>seq153
Length=425603
Score = 140 bits (154), Expect = 6e-28
Identities = 168/228 (74%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||| || || || || ||||| || || |||| || || || || ||
Sbjct 197642 CCTCCACGAAGACGAAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAA 197701
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||||| | || ||||| || || || || ||||| |||| || ||| |||||||
Sbjct 197702 AGAATACGTCCATCTTCAAGCTG----CCTGCGAAGATGAGTCGCTGCTGACCTGGAGGA 197757
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
| |||||||| || || ||||| ||||| ||||| |||||||||||| | | |||||
Sbjct 197758 ACGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACT 197817
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || ||||| | ||||| |||||||| || ||||| |||
Sbjct 197818 TCCAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATT 197865
Score = 120 bits (132), Expect = 6e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
||||| | || |||||||| || ||||| || || ||| | || || || || |||
Sbjct 197890 TGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTCGAGCTGT 197949
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| | |||||||| || | ||| || ||||| || ||||||||||| || || |||||
Sbjct 197950 TTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTC 198009
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || || || || ||||| ||| | || || || | || ||||||| || |||
Sbjct 198010 GCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTC 198069
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
|||||||| || || |||||||||
Sbjct 198070 AACGTCTTCACGAAGATCTGCATT 198093
>seq1193
Length=173371
Score = 132 bits (146), Expect = 9e-26
Identities = 115/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| |||||||| ||||||||||| || |||||||| ||||| |||||
Sbjct 30064 TTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTC 30005
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| |||||||| || |||||||| | |||||||||||| || || ||||| || |||
Sbjct 30004 GCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 29945
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| || || || |||||
Sbjct 29944 AAGGTCTTCACGAAGATTTGCAT 29922
Score = 114 bits (126), Expect = 3e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| |||| || || |||||||| || |||||||| || || |||||
Sbjct 32333 TTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTC 32274
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
||||| ||||| || |||||||| | |||||||||||| || || ||||| || |||
Sbjct 32273 GCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 32214
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| || || || |||||
Sbjct 32213 AAAGTCTTCACGAAGATTTGCAT 32191
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||| ||||||||||| || ||||| || || || |||||
Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || ||||| |||||||| ||| | ||| || || | || ||||||||||| |||
Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| || || || ||||||
Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||| |||||||| |||||||| || ||||||||||| ||||| |||||
Sbjct 31066 TTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 31007
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || || || || || || ||| | || || || || || || ||||| ||||||
Sbjct 31006 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 30947
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| || || || ||||||
Sbjct 30946 AGTGTCTTCACGAAGATTTGCATT 30923
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| || ||||| |||| ||| ||||| || || ||||||||||| || || ||||||||
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||||||||||| | ||| || || | || ||||| || || || |
Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || || || || |||||
Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || || | |||||||||||||| || |||||||| || |||||||| ||
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| || || || ||||| ||| | || || || | || |||||||| || ||||||
Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || || || || |||||
Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623
>seq12137
Length=1209
Score = 113 bits (124), Expect = 9e-20
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| || ||
Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058
Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
|| ||||| || || || || | ||| || ||||||| ||| || ||||| || || |
Sbjct 1059 TTCACATTCTCGATGGTGTC-TGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAG 1117
Query 82790 CGTCTTTACAAATATCTGCAT 82810
|||||| || || ||||||||
Sbjct 1118 CGTCTTAACGAAGATCTGCAT 1138
Score = 111 bits (122), Expect = 3e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| |||||||| | || ||||||||||| || || |||||||| ||||| ||||| ||
Sbjct 691 CCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 750
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| || || || || ||||| || ||| || ||||| || || ||||| || || |
Sbjct 751 TTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCAGTAAGA 810
Query 82791 GTCTTTACAAATATCTGCATT 82811
|||||||| ||||||||||||
Sbjct 811 GTCTTTACGAATATCTGCATT 831
>seq2432
Length=89687
Score = 111 bits (122), Expect = 3e-19
Identities = 118/153 (77%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|||| || || || |||||||| | || || ||||||||||| ||||| ||||| |||
Sbjct 8072 TCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 8131
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGT 82777
||||||||||| || || ||||| || || || | ||| || ||||||| || || ||
Sbjct 8132 TGAATCTTTGCCTTGACGTTTTCGATGGTGTC-TGAGGCCTCGACTTCCAGGGTGATTGT 8190
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| || || | |||||| || || ||||||||
Sbjct 8191 CTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| || ||||| |||| || || |||||||| ||||||||||| ||||||||||| |||
Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| || || || || | || || || | || || ||||| ||||| | |
Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513
Query 82791 GTCTTTACAAATATCTGCATT 82811
|| || || || || ||||||
Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748
|| ||||| ||||| || || || || ||||| ||||| || || ||||| || || ||
Sbjct 6342 TGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTG 6401
Query 82749 TCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807
|| | ||| ||| || |||| || || ||||| || || | ||||||||| ||||||||
Sbjct 6402 TC-TGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTGAGCGTCTTTACGAATATCTG 6460
Query 82808 CATT 82811
||||
Sbjct 6461 CATT 6464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981529728756333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |