Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq153 140 6e-28 seq1193 132 9e-26 seq12137 113 9e-20 seq2432 111 3e-19 >seq153 Length=425603 Score = 140 bits (154), Expect = 6e-28 Identities = 168/228 (74%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || ||||| || || |||| || || || || || Sbjct 197642 CCTCCACGAAGACGAAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAA 197701 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||||| | || ||||| || || || || ||||| |||| || ||| ||||||| Sbjct 197702 AGAATACGTCCATCTTCAAGCTG----CCTGCGAAGATGAGTCGCTGCTGACCTGGAGGA 197757 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 | |||||||| || || ||||| ||||| ||||| |||||||||||| | | ||||| Sbjct 197758 ACGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACT 197817 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| | ||||| |||||||| || ||||| ||| Sbjct 197818 TCCAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATT 197865 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| | || |||||||| || ||||| || || ||| | || || || || ||| Sbjct 197890 TGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTCGAGCTGT 197949 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || | |||||||| || | ||| || ||||| || ||||||||||| || || ||||| Sbjct 197950 TTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTC 198009 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || ||||| ||| | || || || | || ||||||| || ||| Sbjct 198010 GCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTC 198069 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||||||| Sbjct 198070 AACGTCTTCACGAAGATCTGCATT 198093 >seq1193 Length=173371 Score = 132 bits (146), Expect = 9e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 30064 TTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTC 30005 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||| || |||||||| | |||||||||||| || || ||||| || ||| Sbjct 30004 GCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 29945 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || ||||| Sbjct 29944 AAGGTCTTCACGAAGATTTGCAT 29922 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| |||| || || |||||||| || |||||||| || || ||||| Sbjct 32333 TTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTC 32274 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || |||||||| | |||||||||||| || || ||||| || ||| Sbjct 32273 GCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 32214 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || ||||| Sbjct 32213 AAAGTCTTCACGAAGATTTGCAT 32191 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||| ||||||||||| || ||||| || || || ||||| Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| |||||||| ||| | ||| || || | || ||||||||||| ||| Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| |||||||| |||||||| || ||||||||||| ||||| ||||| Sbjct 31066 TTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 31007 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || ||| | || || || || || || ||||| |||||| Sbjct 31006 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 30947 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 30946 AGTGTCTTCACGAAGATTTGCATT 30923 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| ||| ||||| || || ||||||||||| || || |||||||| Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||||||||||| | ||| || || | || ||||| || || || | Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | |||||||||||||| || |||||||| || |||||||| || Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || |||||||| || |||||| Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623 >seq12137 Length=1209 Score = 113 bits (124), Expect = 9e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058 Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 || ||||| || || || || | ||| || ||||||| ||| || ||||| || || | Sbjct 1059 TTCACATTCTCGATGGTGTC-TGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAG 1117 Query 82790 CGTCTTTACAAATATCTGCAT 82810 |||||| || || |||||||| Sbjct 1118 CGTCTTAACGAAGATCTGCAT 1138 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| | || ||||||||||| || || |||||||| ||||| ||||| || Sbjct 691 CCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 750 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || ||||| || ||| || ||||| || || ||||| || || | Sbjct 751 TTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCAGTAAGA 810 Query 82791 GTCTTTACAAATATCTGCATT 82811 |||||||| |||||||||||| Sbjct 811 GTCTTTACGAATATCTGCATT 831 >seq2432 Length=89687 Score = 111 bits (122), Expect = 3e-19 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| || || || |||||||| | || || ||||||||||| ||||| ||||| ||| Sbjct 8072 TCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 8131 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGT 82777 ||||||||||| || || ||||| || || || | ||| || ||||||| || || || Sbjct 8132 TGAATCTTTGCCTTGACGTTTTCGATGGTGTC-TGAGGCCTCGACTTCCAGGGTGATTGT 8190 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | |||||| || || |||||||| Sbjct 8191 CTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| || || |||||||| ||||||||||| ||||||||||| ||| Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || || || | || || || | || || ||||| ||||| | | Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || || |||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||| ||||| || || || || ||||| ||||| || || ||||| || || || Sbjct 6342 TGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTG 6401 Query 82749 TCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || | ||| ||| || |||| || || ||||| || || | ||||||||| |||||||| Sbjct 6402 TC-TGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTGAGCGTCTTTACGAATATCTG 6460 Query 82808 CATT 82811 |||| Sbjct 6461 CATT 6464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981529728756333