Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq362 102 8e-17
seq1193 95.1 1e-14
seq3 89.7 5e-13
seq2432 87.8 2e-12
seq153 82.4 7e-11
>seq362
Length=320851
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||||||||||| ||||| || ||||| || || ||||||||||| ||||| |
Sbjct 3799 CCTGCGTAAATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTTCAGT 3858
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | |||| |||||| | |||||| || | || |||||||| || ||||| |||
Sbjct 3859 TTCACATTTTCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGTGAGA 3918
Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664
||||| ||||| | |||||| ||
Sbjct 3919 GTTTTCACGAAGACTTGCATGCCT 3942
>seq1193
Length=173371
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
||||||| ||||| || || |||||||||||||||||||| ||||| ||| | |
Sbjct 29755 AAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGT 29696
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
||| | |||||| | || ||| || |||| |||| || || ||||||| ||||| |
Sbjct 29695 TCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAACGTTTTCA 29636
Query 133648 CGAAAATCTGCATGGCT 133664
|||| || |||||| ||
Sbjct 29635 CGAAGATTTGCATGCCT 29619
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| || || |||| || || ||||| || |||||||||||||| ||||| ||||||
Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||||| |||||| | || ||||| || | |||| || ||||||||
Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
||| || || ||||| || |||||
Sbjct 29348 CAGTGTCTTCACGAAGATTTGCAT 29325
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| || ||| | ||||| || |||||||| || || |||||||||||||| ||||||
Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||| | |||||||| || ||| || || | ||||| || || || ||
Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||| || ||||| || |||||
Sbjct 30249 CAAAGTCTTCACGAAGATTTGCAT 30226
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| ||| || ||| | ||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| |||| | ||| | ||| |||| || || || || | |||| ||| || ||
Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
|||| ||| || ||||| || |||||| ||
Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTGCATGCCT 32187
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | ||||| ||||||||||| ||||||||||| |||||||| |||||| |
Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||||| | || || || | |||| ||| || || |||||
Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || || || ||||||||
Sbjct 29049 GTCTTCACAAAGATCTGCAT 29030
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| || ||| | ||||| || |||||||| || || |||||||||||||| ||||||
Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||| | ||||| | || ||| || || | ||||| ||| || || ||
Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
||| || || ||||| || |||||
Sbjct 31250 CAGTGTCTTCACGAAGATTTGCAT 31227
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | ||||| || ||||| || || || || ||||||||||| ||||||| |
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||||| ||| || | || ||||| |||| |||| ||||| || || ||
Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113
Query 133641 GTTTTTACGAAAATCTGCATG 133661
||||| ||||| || ||||||
Sbjct 27112 GTTTTCACGAAGATTTGCATG 27092
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | ||||| || |||||||| || || |||||||||||||| |||||| |
Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | || || || | ||||| ||| || |||||||
Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || |||||||| |||||
Sbjct 31546 GTCTTCACGAAAATTTGCAT 31527
>seq3
Length=1029188
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117
|||||| |||||||| ||| || |||| || ||||||||||| ||| || ||||||
Sbjct 36714 TACAGCTCCTCGAACGTCTCTCCCCAGCAGTCATCGAGACCGGGCGACTCATGAGGGCAC 36773
Query 149118 ATGAGCGACCACACGCCGTC-CGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176
|| |||||||| | |||| ||| | || | ||||| |||||||| || | ||| ||
Sbjct 36774 ATCAGCGACCATTCTTCGTCACGC-TCAACCCTTTTCATGAACAGATCAGGAATCCACAG 36832
Query 149177 CGCGTACATGAGGTCGCGCGC 149197
||||| | |||||||| ||
Sbjct 36833 AGCGTAGAACAGGTCGCGAGC 36853
>seq2432
Length=89687
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || ||||||||||| |||||||| ||||||||||| |||||
Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | ||| | ||||||| | |||||| |||| ||| | || || || || ||
Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513
Query 133641 GTTTTTACGAAAATCTGCATGGC 133663
||||| ||||| || ||||| ||
Sbjct 8514 GTTTTAACGAAGATTTGCATTGC 8536
>seq153
Length=425603
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523
||||||||||||| || || || || | ||| | | | ||||||||||| ||| |
Sbjct 197897 TGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCA-TCCTCGAGCTGTTTGTCG 197955
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | ||||| || |||||||| || || || ||||||||||| |||||| |||
Sbjct 197956 GCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 198015
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||| | ||| || | | | || || | |||| || || ||||||| ||
Sbjct 198016 ACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTC 198075
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 198076 TTCACGAAGATCTGCAT 198092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483277906854280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |