Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq362 102 8e-17 seq1193 95.1 1e-14 seq3 89.7 5e-13 seq2432 87.8 2e-12 seq153 82.4 7e-11 >seq362 Length=320851 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||||||||||| ||||| || ||||| || || ||||||||||| ||||| | Sbjct 3799 CCTGCGTAAATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTTCAGT 3858 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| |||||| | |||||| || | || |||||||| || ||||| ||| Sbjct 3859 TTCACATTTTCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGTGAGA 3918 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 ||||| ||||| | |||||| || Sbjct 3919 GTTTTCACGAAGACTTGCATGCCT 3942 >seq1193 Length=173371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 ||||||| ||||| || || |||||||||||||||||||| ||||| ||| | | Sbjct 29755 AAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGT 29696 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||| | |||||| | || ||| || |||| |||| || || ||||||| ||||| | Sbjct 29695 TCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAACGTTTTCA 29636 Query 133648 CGAAAATCTGCATGGCT 133664 |||| || |||||| || Sbjct 29635 CGAAGATTTGCATGCCT 29619 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || |||| || || ||||| || |||||||||||||| ||||| |||||| Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| |||||| | || ||||| || | |||| || |||||||| Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| || ||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCAT 29325 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | ||||| || |||||||| || || |||||||||||||| |||||| Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | |||||||| || ||| || || | ||||| || || || || Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||| || ||||| || ||||| Sbjct 30249 CAAAGTCTTCACGAAGATTTGCAT 30226 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||| || ||| | ||||| ||||||||||| ||||| || ||||||||||| ||| Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | ||| | ||| |||| || || || || | |||| ||| || || Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||| ||| || ||||| || |||||| || Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTGCATGCCT 32187 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||||||||| ||||||||||| |||||||| |||||| | Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | |||||||| | || || || | |||| ||| || || ||||| Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 29049 GTCTTCACAAAGATCTGCAT 29030 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | ||||| || |||||||| || || |||||||||||||| |||||| Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| | || ||| || || | ||||| ||| || || || Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| || ||||| Sbjct 31250 CAGTGTCTTCACGAAGATTTGCAT 31227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| || ||||| || || || || ||||||||||| ||||||| | Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||| || | || ||||| |||| |||| ||||| || || || Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| ||||| || |||||| Sbjct 27112 GTTTTCACGAAGATTTGCATG 27092 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| || |||||||| || || |||||||||||||| |||||| | Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | |||||| | | || || || | ||||| ||| || ||||||| Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||| ||||| Sbjct 31546 GTCTTCACGAAAATTTGCAT 31527 >seq3 Length=1029188 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 |||||| |||||||| ||| || |||| || ||||||||||| ||| || |||||| Sbjct 36714 TACAGCTCCTCGAACGTCTCTCCCCAGCAGTCATCGAGACCGGGCGACTCATGAGGGCAC 36773 Query 149118 ATGAGCGACCACACGCCGTC-CGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176 || |||||||| | |||| ||| | || | ||||| |||||||| || | ||| || Sbjct 36774 ATCAGCGACCATTCTTCGTCACGC-TCAACCCTTTTCATGAACAGATCAGGAATCCACAG 36832 Query 149177 CGCGTACATGAGGTCGCGCGC 149197 ||||| | |||||||| || Sbjct 36833 AGCGTAGAACAGGTCGCGAGC 36853 >seq2432 Length=89687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || ||||||||||| |||||||| ||||||||||| ||||| Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||| | ||||||| | |||||| |||| ||| | || || || || || Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 133641 GTTTTTACGAAAATCTGCATGGC 133663 ||||| ||||| || ||||| || Sbjct 8514 GTTTTAACGAAGATTTGCATTGC 8536 >seq153 Length=425603 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||||| || || || || | ||| | | | ||||||||||| ||| | Sbjct 197897 TGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCA-TCCTCGAGCTGTTTGTCG 197955 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| || |||||||| || || || ||||||||||| |||||| ||| Sbjct 197956 GCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 198015 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||| || | | | || || | |||| || || ||||||| || Sbjct 198016 ACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTC 198075 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 198076 TTCACGAAGATCTGCAT 198092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483277906854280