Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4254 163 4e-34
seq1953 145 1e-28
seq1784 143 4e-28
seq128 125 1e-22
seq3103 122 1e-21
seq55 122 1e-21
seq537 116 5e-20
seq395 109 8e-18
seq168 109 8e-18
seq838 100 4e-15
seq606 93.3 6e-13
>seq4254
Length=35462
Score = 163 bits (180), Expect = 4e-34
Identities = 178/232 (77%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||| || ||||||||||| || || |||| | | | || ||||| || |
Sbjct 32605 ATCTACCGCGTCCTCAAGCAGGTCCATCCGGACACCG--GCGTC-TCGTCCAA--AG-CG 32552
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| ||||||||||| || ||||||||| | |||| ||||||| | |||| || |
Sbjct 32551 ATGTCCATCATGAACTCCTTCGTCAACGACGTATTCGAACGCATCGCCGCCGAAGCGTCT 32492
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||||| | |||||||||| |||||| | |||||||| ||||| || |||
Sbjct 32491 CGCCTGGCGCAGTACAACAAGCGCTCGACGATCTCGTCCCGCGAGATTCAGACGGCTGTG 32432
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||||| ||| ||| ||||| |||| |||||||||||||||||||||||
Sbjct 32431 CGTCTGATTCTGCCCGGTGAACTCGCCAAGCACGCCGTCTCCGAGGGCACCA 32380
>seq1953
Length=113096
Score = 145 bits (160), Expect = 1e-28
Identities = 171/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||| ||||| |||||||| |||||| |||| || |||| ||| ||
Sbjct 112147 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCC 112200
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||||||||||||||| || |||||| | |||| ||||||| |||| |||
Sbjct 112201 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGCCGAAGCCTCG 112260
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||||| |||||| | ||||| |||||||| |||||
Sbjct 112261 CGTCTCGCCCACTACAACAAGCGGTCGACGATCTCATCTCGCGAAATCCAGACGGCCGTC 112320
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || ||| | | ||| || || |||| ||||||||| || ||||||||||
Sbjct 112321 CGACTCATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTATCTGAGGGCACCA 112372
>seq1784
Length=122469
Score = 143 bits (158), Expect = 4e-28
Identities = 178/244 (73%), Gaps = 6/244 (2%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
|||||| || |||||| ||||| |||||||| |||||| |||| || | ||
Sbjct 66775 TACTCGGTCTACATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCGTCG 66716
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||| | |||||||||||||||||||| || |||||| | |||| ||||||| |
Sbjct 66715 ------AAGGCGATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCC 66662
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
| || ||| || || || | || ||||||||| |||||| | ||||| |||
Sbjct 66661 GCTGAAGCCTCGCGTCTCGCCCACTACAACAAGCGATCGACGATCTCATCTCGCGAAATC 66602
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| ||||| || || ||| | | ||| || || |||| |||||||||||| ||||||
Sbjct 66601 CAGACGGCCGTCCGGCTCATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGC 66542
Query 725139 ACCA 725142
||||
Sbjct 66541 ACCA 66538
>seq128
Length=455210
Score = 125 bits (138), Expect = 1e-22
Identities = 131/172 (76%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||| |||||| || ||||||||| | |||| ||||||| | |||| || |
Sbjct 216066 ATGTCCATCACGAACTCCTTCGTCAACGACGTATTCGAACGCATCGCCGCCGAAGCGTCT 216125
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| |||||| | |||||| ||| |||||| |||||||| ||||| || |||
Sbjct 216126 CGGTTGGCGCAGTACAACAAACGCTCGACGATCTCGTTCCGCGAGATTCAGACGGCTGTG 216185
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||||| ||| ||| ||||| |||| ||||||| |||||||||||| ||
Sbjct 216186 CGTCTGATTTTGCCCGGTGAACTCGCCAAGCACGCCATCTCCGAGGGCAACA 216237
>seq3103
Length=64818
Score = 122 bits (134), Expect = 1e-21
Identities = 169/232 (73%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||| ||||| |||||||| |||||| |||| || |||| ||| |
Sbjct 18178 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCG 18125
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||||||||||||||| || |||||| | |||| |||||| | |||| || |
Sbjct 18124 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATC-GTGCCGAAGCTCG- 18067
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||||| |||||| | ||||| |||||||| |||||
Sbjct 18066 CGTCTCGCCCACTACAACAAGCG-TCGACGATCTCATCTCGCGAAATCCAGACGGCCGTC 18008
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || ||| | | | | || || |||| ||||||||| || ||||||||||
Sbjct 18007 CGACTCATCCTTC-CCGAGAGCTCGCCAAGCACGCCGTATCTGAGGGCACCA 17957
>seq55
Length=596864
Score = 122 bits (134), Expect = 1e-21
Identities = 169/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||| | ||||||| ||| || ||| |||| | | | || || || || |
Sbjct 284668 ATCTACAGCATTCTCAAGCTGGTTCATCCCGACACCG--GCGTC-TCGTCTAA--AG-CG 284615
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||||| || ||||||||| | |||| || |||| | |||| || |
Sbjct 284614 ATGTCTATCATGAACTGCTTCGTCAACGACGTATTCGAACGTATCGCCGCCGAAGCGTCT 284555
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||| ||||| | |||||||||| |||||| |||||||| ||||| || |||
Sbjct 284554 CGCCAGGCGCAGTACAACAAGCGCTCGACGATCTCGTGCCGCGAGATTCAGACTGCTGTG 284495
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || | ||| ||| ||||| | | |||||||||||||||||||||||
Sbjct 284494 CGTCTCGTTCTGCCCGGTGAACTCGAAAAGCACGCCGTCTCCGAGGGCACCA 284443
>seq537
Length=272942
Score = 116 bits (128), Expect = 5e-20
Identities = 134/179 (75%), Gaps = 6/179 (3%)
Strand=Plus/Minus
Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023
|||| ||||||||| |||||| ||||| ||||||||||| |||| || |||| | | ||
Sbjct 115489 CAAGGCCATGTCGACCATGAATTCGTTCGTCAACGACATATTCGAACGTATCGCCGCTGA 115430
Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083
|| |||| |||||| | ||||||| | ||||| | |||||||| |||||
Sbjct 115429 AGCGTTTCGCTTGGCGCTGTACAACAAGAGTTCGACGATTTCGTCCCGCGAGATTCAGAC 115370
Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||||| ||| || ||| | ||| |||| ||| |||||||||||||||||||
Sbjct 115369 TGCTGTGCGTCTG-TC-----CGGTGGACTTGCCAAGCATGCCGTCTCCGAGGGCACCA 115317
>seq395
Length=310897
Score = 109 bits (120), Expect = 8e-18
Identities = 162/225 (72%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||| ||||| |||||||| |||||| |||| || |||| ||| ||
Sbjct 4129 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCC 4182
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACAT-GATCGACCGCATCGGCACCGAGGCCGG 725029
|||||||||||||||||||| || |||||| | |||| ||||||| |||| ||| |
Sbjct 4183 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTCTCGAGCGCATCGCTGCCGAAGCCTG 4242
Query 725030 TCGCCTGGCGCGCTCCAAC-AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
|| || || | || |||| ||||| |||||| | ||||| |||||||| ||||
Sbjct 4243 GCGTCTCGCCCACTACAACAAAGCGGTCGACGATCTCATCTCGCGAAATCCAGACGGCCG 4302
Query 725089 TGCGCCTGA--TCATGCGCGGCGAACTGGCCAG-GCACGCCGTCT 725130
| || || | || | | || || || ||||| |||||||||||
Sbjct 4303 TCCGACTCATCTCCTTCCGGGAGAGCTCGCCAGAGCACGCCGTCT 4347
>seq168
Length=413542
Score = 109 bits (120), Expect = 8e-18
Identities = 163/231 (71%), Gaps = 9/231 (4%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||| ||||| |||||||| |||||| |||| || |||| ||| |
Sbjct 34433 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCG 34380
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||||||||||||||| || |||||| | |||| ||||||| | | |||
Sbjct 34379 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGCTCAAGCCTCG 34320
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||||| |||||| || ||||| |||||||| |||||
Sbjct 34319 CGTCTCGCCCACTACAACAAGCGATCGACGATCTCAACTCGCGAAATCCAGACGGCCGTC 34260
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141
|| || ||| | | ||| || || |||| | |||||| || || ||||
Sbjct 34259 CGACTCATCCTTCCCGGAGAGCTCGCCA---AGGCCGTCACCAAGTACACC 34212
>seq838
Length=217876
Score = 100 bits (110), Expect = 4e-15
Identities = 123/167 (74%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||| | ||| ||||||||| | |||| || |||| |||| || |
Sbjct 192300 ATGTCCATCATGAAGTTGTTCGTCAACGACGTATTCGAACGTATCGCAGCCGAAGCGTCT 192241
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
| |||||||| | |||||||||| ||||| |||||||| ||||| || |||
Sbjct 192240 CACCTGGCGCAGTGCAACAAGCGCTCGGCGATCTCGTTCCGCGAGATTCAGACGGCTGTG 192181
Query 725091 CGC--CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
| || || ||| ||| |||||||||| |||| |||||||||||
Sbjct 192180 AGTGTCTCATTCTGCCCGGTGAACTGGCCAAGCACACCGTCTCCGAG 192134
>seq606
Length=258679
Score = 93.3 bits (102), Expect = 6e-13
Identities = 128/178 (72%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| | |||||||||||||||||||| || |||||| | |||| ||||||| |
Sbjct 113262 AAGGCGATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGCTATA 113203
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
||| || || || || || ||||| |||||| | ||||| |||||||||
Sbjct 113202 GCCTCGCGTCTCGCCTACTACAGTAAGCGGTCGACGATCTCATCTCGCGAAATCCAGACC 113143
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| || || ||| | | | || || |||| ||||||||| || ||||||||||
Sbjct 113142 GCCGTCCGACTCATCCTTCCC--AGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCA 113087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175530403386814
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