Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4254 163 4e-34 seq1953 145 1e-28 seq1784 143 4e-28 seq128 125 1e-22 seq3103 122 1e-21 seq55 122 1e-21 seq537 116 5e-20 seq395 109 8e-18 seq168 109 8e-18 seq838 100 4e-15 seq606 93.3 6e-13 >seq4254 Length=35462 Score = 163 bits (180), Expect = 4e-34 Identities = 178/232 (77%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| || || |||| | | | || ||||| || | Sbjct 32605 ATCTACCGCGTCCTCAAGCAGGTCCATCCGGACACCG--GCGTC-TCGTCCAA--AG-CG 32552 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||| | |||| ||||||| | |||| || | Sbjct 32551 ATGTCCATCATGAACTCCTTCGTCAACGACGTATTCGAACGCATCGCCGCCGAAGCGTCT 32492 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| | |||||||||| |||||| | |||||||| ||||| || ||| Sbjct 32491 CGCCTGGCGCAGTACAACAAGCGCTCGACGATCTCGTCCCGCGAGATTCAGACGGCTGTG 32432 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| ||| ||| ||||| |||| ||||||||||||||||||||||| Sbjct 32431 CGTCTGATTCTGCCCGGTGAACTCGCCAAGCACGCCGTCTCCGAGGGCACCA 32380 >seq1953 Length=113096 Score = 145 bits (160), Expect = 1e-28 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| |||| || |||| ||| || Sbjct 112147 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCC 112200 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| |||| ||| Sbjct 112201 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGCCGAAGCCTCG 112260 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | ||||| |||||||| ||||| Sbjct 112261 CGTCTCGCCCACTACAACAAGCGGTCGACGATCTCATCTCGCGAAATCCAGACGGCCGTC 112320 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| || || |||| ||||||||| || |||||||||| Sbjct 112321 CGACTCATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTATCTGAGGGCACCA 112372 >seq1784 Length=122469 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || |||||| ||||| |||||||| |||||| |||| || | || Sbjct 66775 TACTCGGTCTACATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCGTCG 66716 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| | |||||||||||||||||||| || |||||| | |||| ||||||| | Sbjct 66715 ------AAGGCGATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCC 66662 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| || || || | || ||||||||| |||||| | ||||| ||| Sbjct 66661 GCTGAAGCCTCGCGTCTCGCCCACTACAACAAGCGATCGACGATCTCATCTCGCGAAATC 66602 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| || || ||| | | ||| || || |||| |||||||||||| |||||| Sbjct 66601 CAGACGGCCGTCCGGCTCATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGC 66542 Query 725139 ACCA 725142 |||| Sbjct 66541 ACCA 66538 >seq128 Length=455210 Score = 125 bits (138), Expect = 1e-22 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||| |||||| || ||||||||| | |||| ||||||| | |||| || | Sbjct 216066 ATGTCCATCACGAACTCCTTCGTCAACGACGTATTCGAACGCATCGCCGCCGAAGCGTCT 216125 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||||| | |||||| ||| |||||| |||||||| ||||| || ||| Sbjct 216126 CGGTTGGCGCAGTACAACAAACGCTCGACGATCTCGTTCCGCGAGATTCAGACGGCTGTG 216185 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| ||| ||| ||||| |||| ||||||| |||||||||||| || Sbjct 216186 CGTCTGATTTTGCCCGGTGAACTCGCCAAGCACGCCATCTCCGAGGGCAACA 216237 >seq3103 Length=64818 Score = 122 bits (134), Expect = 1e-21 Identities = 169/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| |||| || |||| ||| | Sbjct 18178 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCG 18125 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| |||||| | |||| || | Sbjct 18124 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATC-GTGCCGAAGCTCG- 18067 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | ||||| |||||||| ||||| Sbjct 18066 CGTCTCGCCCACTACAACAAGCG-TCGACGATCTCATCTCGCGAAATCCAGACGGCCGTC 18008 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | | | || || |||| ||||||||| || |||||||||| Sbjct 18007 CGACTCATCCTTC-CCGAGAGCTCGCCAAGCACGCCGTATCTGAGGGCACCA 17957 >seq55 Length=596864 Score = 122 bits (134), Expect = 1e-21 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||| | ||||||| ||| || ||| |||| | | | || || || || | Sbjct 284668 ATCTACAGCATTCTCAAGCTGGTTCATCCCGACACCG--GCGTC-TCGTCTAA--AG-CG 284615 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||| || ||||||||| | |||| || |||| | |||| || | Sbjct 284614 ATGTCTATCATGAACTGCTTCGTCAACGACGTATTCGAACGTATCGCCGCCGAAGCGTCT 284555 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||| ||||| | |||||||||| |||||| |||||||| ||||| || ||| Sbjct 284554 CGCCAGGCGCAGTACAACAAGCGCTCGACGATCTCGTGCCGCGAGATTCAGACTGCTGTG 284495 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| ||||| | | ||||||||||||||||||||||| Sbjct 284494 CGTCTCGTTCTGCCCGGTGAACTCGAAAAGCACGCCGTCTCCGAGGGCACCA 284443 >seq537 Length=272942 Score = 116 bits (128), Expect = 5e-20 Identities = 134/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||||||| |||||| ||||| ||||||||||| |||| || |||| | | || Sbjct 115489 CAAGGCCATGTCGACCATGAATTCGTTCGTCAACGACATATTCGAACGTATCGCCGCTGA 115430 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 || |||| |||||| | ||||||| | ||||| | |||||||| ||||| Sbjct 115429 AGCGTTTCGCTTGGCGCTGTACAACAAGAGTTCGACGATTTCGTCCCGCGAGATTCAGAC 115370 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| ||| || ||| | ||| |||| ||| ||||||||||||||||||| Sbjct 115369 TGCTGTGCGTCTG-TC-----CGGTGGACTTGCCAAGCATGCCGTCTCCGAGGGCACCA 115317 >seq395 Length=310897 Score = 109 bits (120), Expect = 8e-18 Identities = 162/225 (72%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| |||| || |||| ||| || Sbjct 4129 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCC 4182 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACAT-GATCGACCGCATCGGCACCGAGGCCGG 725029 |||||||||||||||||||| || |||||| | |||| ||||||| |||| ||| | Sbjct 4183 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTCTCGAGCGCATCGCTGCCGAAGCCTG 4242 Query 725030 TCGCCTGGCGCGCTCCAAC-AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | || |||| ||||| |||||| | ||||| |||||||| |||| Sbjct 4243 GCGTCTCGCCCACTACAACAAAGCGGTCGACGATCTCATCTCGCGAAATCCAGACGGCCG 4302 Query 725089 TGCGCCTGA--TCATGCGCGGCGAACTGGCCAG-GCACGCCGTCT 725130 | || || | || | | || || || ||||| ||||||||||| Sbjct 4303 TCCGACTCATCTCCTTCCGGGAGAGCTCGCCAGAGCACGCCGTCT 4347 >seq168 Length=413542 Score = 109 bits (120), Expect = 8e-18 Identities = 163/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| |||| || |||| ||| | Sbjct 34433 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCGGTGTCTCATCG------AAGGCG 34380 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| | | ||| Sbjct 34379 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGCTCAAGCCTCG 34320 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| || ||||| |||||||| ||||| Sbjct 34319 CGTCTCGCCCACTACAACAAGCGATCGACGATCTCAACTCGCGAAATCCAGACGGCCGTC 34260 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141 || || ||| | | ||| || || |||| | |||||| || || |||| Sbjct 34259 CGACTCATCCTTCCCGGAGAGCTCGCCA---AGGCCGTCACCAAGTACACC 34212 >seq838 Length=217876 Score = 100 bits (110), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| | ||| ||||||||| | |||| || |||| |||| || | Sbjct 192300 ATGTCCATCATGAAGTTGTTCGTCAACGACGTATTCGAACGTATCGCAGCCGAAGCGTCT 192241 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | |||||||| | |||||||||| ||||| |||||||| ||||| || ||| Sbjct 192240 CACCTGGCGCAGTGCAACAAGCGCTCGGCGATCTCGTTCCGCGAGATTCAGACGGCTGTG 192181 Query 725091 CGC--CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 | || || ||| ||| |||||||||| |||| ||||||||||| Sbjct 192180 AGTGTCTCATTCTGCCCGGTGAACTGGCCAAGCACACCGTCTCCGAG 192134 >seq606 Length=258679 Score = 93.3 bits (102), Expect = 6e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | |||||||||||||||||||| || |||||| | |||| ||||||| | Sbjct 113262 AAGGCGATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGCTATA 113203 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| || || || || || ||||| |||||| | ||||| ||||||||| Sbjct 113202 GCCTCGCGTCTCGCCTACTACAGTAAGCGGTCGACGATCTCATCTCGCGAAATCCAGACC 113143 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || || ||| | | | || || |||| ||||||||| || |||||||||| Sbjct 113142 GCCGTCCGACTCATCCTTCCC--AGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCA 113087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175530403386814