Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2432 111 2e-19 seq1193 84.2 2e-11 >seq2432 Length=89687 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || |||| |||||||| || || || || ||||| || |||||||| || | Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||||||||| ||||| ||||| ||||| || || || |||| Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 134694 GTTTTAACGAAAATTTGCAtt 134714 ||||||||||| ||||||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 >seq1193 Length=173371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| |||||||| || || ||||||||||| || || || || Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| || | |||||| || || || || || || ||||| Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348 Query 134691 AAAGTTTTAACGAAAATTTGCAtt 134714 | || || ||||| ||||||||| Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505249010550440