Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1193 82.4 6e-11 seq3 82.4 6e-11 >seq1193 Length=173371 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 27099 AGCTGTT----TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||||||| ||||||| ||||||||||||||||||| || || | || || || || Sbjct 29775 AGCTGTTACCGTACCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTC 29716 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| |||| | | || | ||||| | ||| ||||| || || || || | Sbjct 29715 CTGAATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGT 29656 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || |||| |||||||| ||||||||||| Sbjct 29655 CTTTCCGGTCAACGTTTTCACGAAGATTTGCAT 29623 >seq3 Length=1029188 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/244 (68%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800 || || |||||||||||||| ||||||| || | || | || ||| |||||| Sbjct 36959 TCAAAGATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCTGGACGCTTATTT 37018 Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860 |||||||| | |||| || | |||||||||| || || | ||| || | |||| Sbjct 37019 CCGCCTTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCG 37078 Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGCTG--CCATTGGCTCTGATTTTGTGAACGT 131918 |||| | | || || |||| ||| || || ||| | || | ||||||||| |||| Sbjct 37079 TTGGAGGTGCCGTTCGTGCCGGCAAT-CAG-TGAACCAGTAGCGCGGATTTTGTGCACGT 37136 Query 131919 TGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGA 131978 | || ||||| || || || || ||||| || || |||| | || |||| |||| Sbjct 37137 TCAGGCCAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGA 37196 Query 131979 TACC 131982 | || Sbjct 37197 TGCC 37200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424811934835464