Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 82.4 6e-11
seq3 82.4 6e-11
>seq1193
Length=173371
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/153 (72%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 27099 AGCTGTT----TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||||||| ||||||| ||||||||||||||||||| || || | || || || ||
Sbjct 29775 AGCTGTTACCGTACCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTC 29716
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||| |||| | | || | ||||| | ||| ||||| || || || || |
Sbjct 29715 CTGAATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGT 29656
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || |||| |||||||| |||||||||||
Sbjct 29655 CTTTCCGGTCAACGTTTTCACGAAGATTTGCAT 29623
>seq3
Length=1029188
Score = 82.4 bits (90), Expect = 6e-11
Identities = 167/244 (68%), Gaps = 7/244 (3%)
Strand=Plus/Plus
Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800
|| || |||||||||||||| ||||||| || | || | || ||| ||||||
Sbjct 36959 TCAAAGATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCTGGACGCTTATTT 37018
Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860
|||||||| | |||| || | |||||||||| || || | ||| || | ||||
Sbjct 37019 CCGCCTTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCG 37078
Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGCTG--CCATTGGCTCTGATTTTGTGAACGT 131918
|||| | | || || |||| ||| || || ||| | || | ||||||||| ||||
Sbjct 37079 TTGGAGGTGCCGTTCGTGCCGGCAAT-CAG-TGAACCAGTAGCGCGGATTTTGTGCACGT 37136
Query 131919 TGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGA 131978
| || ||||| || || || || ||||| || || |||| | || |||| ||||
Sbjct 37137 TCAGGCCAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGA 37196
Query 131979 TACC 131982
| ||
Sbjct 37197 TGCC 37200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424811934835464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |