Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2969 149 2e-30 seq153 140 1e-27 seq1193 129 2e-24 seq3001 107 6e-18 seq12137 104 7e-17 seq2432 95.1 4e-14 seq362 93.3 1e-13 >seq2969 Length=69424 Score = 149 bits (164), Expect = 2e-30 Identities = 528/816 (65%), Gaps = 8/816 (1%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 ||||| || | || ||||| ||||| || || || | |||||| || || || ||| Sbjct 50629 GATGCCGTCGTCACCGTACCGGCCTACTTCAACGACTCACAGCGTCAAGCCACCAAGGAT 50688 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 ||||| ||| || || | ||||| || |||| || || |||||||||||||| || Sbjct 50689 GCTGGAGCCATCGCCGGCCTGAATGTCCTTCGAATCATCAACGAACCCACTGCTGCTGCT 50748 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || || || || || || | | || | ||| ||| | || || || ||| | Sbjct 50749 ATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCTT 50808 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || |||||||| || ||||| || | || || | || || ||||| || ||||| || Sbjct 50809 GGAGGTGGTACCTTCGATGTGTCCATCCTGACCATCGAGGACGGAATCTTCGAAGTCAAG 50868 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906 | || ||||| || || |||||||| ||||| || || || || || | || || Sbjct 50869 TCCACCGCTGGAGACACCCATCTTGGAGGAGAGGACTTCGACAACCGAATGGTCAACCAC 50928 Query 349907 TTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA-TAATCCTAGAGCAA 349964 ||||| || || ||||| ||||| || | ||| || | | |||||| | || Sbjct 50929 TTTGTCGCCGAGTTCAAGCG-CAAGCACAAGAAGGAT-CTGAACACCAATCCTCGTGCCC 50986 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 | || || || | || || || |||||||| |||||| || | ||||| | |||| Sbjct 50987 TTCGACGACTCCGCACCGCCTGCGAACGTGCAAAGCGTACCCTCTCATCGTCATCCCAGG 51046 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | || || || || || || || || || | || |||| | ||||| |||| Sbjct 51047 CTTCGATCGAGATCGACTCGCTGTTCGAGGGTATTGACTTCTACACTAACATTACTCGTG 51106 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || || || | || || || || | | || ||||| || || || || Sbjct 51107 CCCGTTTCGAGGAGCTCTGCGCTGACCTCTTCCGCTCCACCATGGACCCCGTCGAGAAGT 51166 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | ||| || || ||| ||| | ||| | | || | || | || || || | Sbjct 51167 CGCTGAGAGACGCCAAGATGGACAAGAGCCAGGTGCACGACATCGTCCTGGTCGGAGGAT 51226 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || ||||| || || || || || | || || || | || ||||| |||| Sbjct 51227 CCACCCGTATCCCTAAGGTCCAGAAGCTGCTCTCCGATCTGTTCTCCGGCAAGGAACTGA 51286 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | || || || || || || || || || || || ||||| || || || |||| Sbjct 51287 ACAAGTCGATCAACCCCGACGAGGCCGTCGCCTACGGAGCTGCCGTCCAAGCCGCTATCC 51346 Query 350325 TATCTGGAAATAAGAGTTCTAAAAT-TG-ATGATCTATTACTACTAGATGTAACTCCACT 350382 | |||||| | | ||| | | | || | ||||| | || || || || | ||||| Sbjct 51347 TCTCTGGAGACA--AGTCCGAGGCTGTGCAGGATCTCCTGCTCCTCGACGTCGCCCCACT 51404 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGAC 350418 ||||| || | || ||| | |||| ||| ||||| Sbjct 51405 GTCGCTCGGTATCGAGACTGCAGGTGGAGTGATGAC 51440 >seq153 Length=425603 Score = 140 bits (154), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140512 CACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATA 140571 ||||||| | | || || ||||| || | |||||||| || || ||||| || || | Sbjct 197867 CACCACGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAA 197926 Query 140572 ATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAA 140631 || | ||||| || || ||||| | |||||||| ||||||||||| || || |||| Sbjct 197927 GAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAA 197986 Query 140632 TTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTT 140691 ||||||| || ||||| || || || || || || || |||| ||||||| || ||| | Sbjct 197987 TTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCT 198046 Query 140692 CAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||||||||| | || || || || ||||||||| Sbjct 198047 CTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || | ||| ||||| ||||| || | || || || || || | | || |||||| Sbjct 197657 AGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAGAATACGTCCATCT 197716 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || ||||| || || |||||| | ||||||| ||||| || ||| Sbjct 197717 TCAAGCTG----CCTGCGAAGATGAGTCGCTGCTGACCTGGAGGAACGCCTTCCTTGTCC 197772 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| ||||| ||||||| |||||| | | | ||||| | ||| | ||| Sbjct 197773 TGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTCCAATGTGATGGTC 197832 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || | || | || ||||| |||||||| ||| Sbjct 197833 TTCGCAGTCAAGGTCTTTACGAAAATCTGAATT 197865 >seq1193 Length=173371 Score = 129 bits (142), Expect = 2e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||||||||| ||||| || |||||||| ||||| || || Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||||| ||||| | ||| || |||||||| | ||||| ||||| Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || || || |||||| Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || ||||||||||| || ||||||||||| || ||||| || || || Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| |||||| | ||| || || ||||| | || ||||| || || Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || || ||||| Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || |||||||| || || ||||| ||||| || || || || || || Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || |||| ||||||| |||||| || | || | ||||||||||| | Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || ||||| || ||||| ||||| || ||||| || |||||||| || || Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || |||| ||||| | ||||| || ||||| | ||||||||||| | Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || || ||||| Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623 >seq3001 Length=68424 Score = 107 bits (118), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||||||||| || ||||||| ||||||| | ||||| || ||||| ||||| |||||| Sbjct 16521 ACAAGATGAAGCGTCGACTCTTCTTGAATACTGTAATCCGACAATGTGCGCCCGTCTTCA 16462 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || | |||||||| || || | |||||| || ||||| || || | ||||| Sbjct 16461 AGATGCATTACTGCAAAGATCAGTCGCTACTGATC-GGGGGAATCCCCTCCTATTCCTGG 16403 Query 140649 ATTTTAGCTTTTACATTATCAATCGA----ATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || | | ||||| | || || || | ||| || || || || | || Sbjct 16402 ATATTGG------CCTTATCGAGAGACAGTGTCCGAGGCTTCCAC-TCCAGAGTGATGGT 16350 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || || || || || |||||||| Sbjct 16349 CTTTCCAGTGAGCGTCTTCACGAAGATCTGCAT 16317 >seq12137 Length=1209 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || ||||||||||| ||||||||||| || || || |||||||| || Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | || ||||| || || | |||||||| || || Sbjct 1059 TTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGC 1118 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 1119 GTCTTAACGAAGATCTGCAT 1138 >seq2432 Length=89687 Score = 95.1 bits (104), Expect = 4e-14 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 |||||| || || || || |||||||| | || |||||||| ||||||||||| || Sbjct 8069 CCATCTACA---TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCC 8125 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || ||||| || || || || || || || | || || | || ||||| || || Sbjct 8126 TTGTCTTGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTG 8185 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||||||| || || || || || || |||||||| Sbjct 8186 ATTGTCTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || | ||| ||||||||||||||||| || ||||| || || || || Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| || || | || || | ||| || || || || | ||||| || || Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || ||||| || ||||||||| Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464 >seq362 Length=320851 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || || || || ||||| || ||||| ||||| || |||||||| || ||| ||||| Sbjct 3808 ATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTTCAGTTTCACATTT 3867 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 ||||||| ||||| || ||||| | || || || ||||||||||| || ||||| || Sbjct 3868 TCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGTGAGAGTTTTCACG 3927 Query 140727 AAAATCTGCAT 140737 || | ||||| Sbjct 3928 AAGACTTGCAT 3938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514795312483541