Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 149 2e-30
seq153 140 1e-27
seq1193 129 2e-24
seq3001 107 6e-18
seq12137 104 7e-17
seq2432 95.1 4e-14
seq362 93.3 1e-13
>seq2969
Length=69424
Score = 149 bits (164), Expect = 2e-30
Identities = 528/816 (65%), Gaps = 8/816 (1%)
Strand=Plus/Plus
Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666
||||| || | || ||||| ||||| || || || | |||||| || || || |||
Sbjct 50629 GATGCCGTCGTCACCGTACCGGCCTACTTCAACGACTCACAGCGTCAAGCCACCAAGGAT 50688
Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726
||||| ||| || || | ||||| || |||| || || |||||||||||||| ||
Sbjct 50689 GCTGGAGCCATCGCCGGCCTGAATGTCCTTCGAATCATCAACGAACCCACTGCTGCTGCT 50748
Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786
|| || || || || || || | | || | ||| ||| | || || || ||| |
Sbjct 50749 ATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCTT 50808
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846
|| |||||||| || ||||| || | || || | || || ||||| || ||||| ||
Sbjct 50809 GGAGGTGGTACCTTCGATGTGTCCATCCTGACCATCGAGGACGGAATCTTCGAAGTCAAG 50868
Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906
| || ||||| || || |||||||| ||||| || || || || || | || ||
Sbjct 50869 TCCACCGCTGGAGACACCCATCTTGGAGGAGAGGACTTCGACAACCGAATGGTCAACCAC 50928
Query 349907 TTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA-TAATCCTAGAGCAA 349964
||||| || || ||||| ||||| || | ||| || | | |||||| | ||
Sbjct 50929 TTTGTCGCCGAGTTCAAGCG-CAAGCACAAGAAGGAT-CTGAACACCAATCCTCGTGCCC 50986
Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024
| || || || | || || || |||||||| |||||| || | ||||| | ||||
Sbjct 50987 TTCGACGACTCCGCACCGCCTGCGAACGTGCAAAGCGTACCCTCTCATCGTCATCCCAGG 51046
Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084
| || || || || || || || || || | || |||| | ||||| ||||
Sbjct 51047 CTTCGATCGAGATCGACTCGCTGTTCGAGGGTATTGACTTCTACACTAACATTACTCGTG 51106
Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144
| || || || || | || || || || | | || ||||| || || || ||
Sbjct 51107 CCCGTTTCGAGGAGCTCTGCGCTGACCTCTTCCGCTCCACCATGGACCCCGTCGAGAAGT 51166
Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204
| | ||| || || ||| ||| | ||| | | || | || | || || || |
Sbjct 51167 CGCTGAGAGACGCCAAGATGGACAAGAGCCAGGTGCACGACATCGTCCTGGTCGGAGGAT 51226
Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264
| || ||||| || || || || || | || || || | || ||||| ||||
Sbjct 51227 CCACCCGTATCCCTAAGGTCCAGAAGCTGCTCTCCGATCTGTTCTCCGGCAAGGAACTGA 51286
Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324
| || || || || || || || || || || || ||||| || || || ||||
Sbjct 51287 ACAAGTCGATCAACCCCGACGAGGCCGTCGCCTACGGAGCTGCCGTCCAAGCCGCTATCC 51346
Query 350325 TATCTGGAAATAAGAGTTCTAAAAT-TG-ATGATCTATTACTACTAGATGTAACTCCACT 350382
| |||||| | | ||| | | | || | ||||| | || || || || | |||||
Sbjct 51347 TCTCTGGAGACA--AGTCCGAGGCTGTGCAGGATCTCCTGCTCCTCGACGTCGCCCCACT 51404
Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGAC 350418
||||| || | || ||| | |||| ||| |||||
Sbjct 51405 GTCGCTCGGTATCGAGACTGCAGGTGGAGTGATGAC 51440
>seq153
Length=425603
Score = 140 bits (154), Expect = 1e-27
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140512 CACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATA 140571
||||||| | | || || ||||| || | |||||||| || || ||||| || || |
Sbjct 197867 CACCACGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAA 197926
Query 140572 ATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAA 140631
|| | ||||| || || ||||| | |||||||| ||||||||||| || || ||||
Sbjct 197927 GAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAA 197986
Query 140632 TTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTT 140691
||||||| || ||||| || || || || || || || |||| ||||||| || ||| |
Sbjct 197987 TTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCT 198046
Query 140692 CAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
| || || ||||||||||| | || || || || |||||||||
Sbjct 198047 CTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093
Score = 118 bits (130), Expect = 3e-21
Identities = 154/213 (72%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || | ||| ||||| ||||| || | || || || || || | | || ||||||
Sbjct 197657 AGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAGAATACGTCCATCT 197716
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
||||| || || || ||||| || || |||||| | ||||||| ||||| || |||
Sbjct 197717 TCAAGCTG----CCTGCGAAGATGAGTCGCTGCTGACCTGGAGGAACGCCTTCCTTGTCC 197772
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || ||||| ||||| ||||||| |||||| | | | ||||| | ||| | |||
Sbjct 197773 TGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTCCAATGTGATGGTC 197832
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|| | || | || ||||| |||||||| |||
Sbjct 197833 TTCGCAGTCAAGGTCTTTACGAAAATCTGAATT 197865
>seq1193
Length=173371
Score = 129 bits (142), Expect = 2e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || |||||||||||||| ||||| || |||||||| ||||| || ||
Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|| || ||||| ||||||| ||||| | ||| || |||||||| | ||||| |||||
Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
||||| || || || || ||||||
Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| || ||||||||||| || ||||||||||| || ||||| || || ||
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||||| |||||| | ||| || || ||||| | || ||||| || ||
Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || || || |||||
Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| || |||||||| || || ||||| ||||| || || || || || ||
Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || |||| ||||||| |||||| || | || | ||||||||||| |
Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526
Score = 100 bits (110), Expect = 9e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| ||||| || ||||| || ||||| ||||| || ||||| || |||||||| || ||
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || || |||| ||||| | ||||| || ||||| | ||||||||||| |
Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || || || |||||
Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623
>seq3001
Length=68424
Score = 107 bits (118), Expect = 6e-18
Identities = 153/213 (72%), Gaps = 12/213 (6%)
Strand=Plus/Minus
Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588
||||||||||| || ||||||| ||||||| | ||||| || ||||| ||||| ||||||
Sbjct 16521 ACAAGATGAAGCGTCGACTCTTCTTGAATACTGTAATCCGACAATGTGCGCCCGTCTTCA 16462
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
|| || || | |||||||| || || | |||||| || ||||| || || | |||||
Sbjct 16461 AGATGCATTACTGCAAAGATCAGTCGCTACTGATC-GGGGGAATCCCCTCCTATTCCTGG 16403
Query 140649 ATTTTAGCTTTTACATTATCAATCGA----ATCAGATGGTTCAACTTCAAGTGTAACTGT 140704
|| || | | ||||| | || || || | ||| || || || || | ||
Sbjct 16402 ATATTGG------CCTTATCGAGAGACAGTGTCCGAGGCTTCCAC-TCCAGAGTGATGGT 16350
Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| || || || || || || ||||||||
Sbjct 16349 CTTTCCAGTGAGCGTCTTCACGAAGATCTGCAT 16317
>seq12137
Length=1209
Score = 104 bits (114), Expect = 7e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| |||||||| || ||||||||||| ||||||||||| || || || |||||||| ||
Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| || || | || || | || ||||| || || | |||||||| || ||
Sbjct 1059 TTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGC 1118
Query 140718 GTTTTTACAAAAATCTGCAT 140737
|| || || || ||||||||
Sbjct 1119 GTCTTAACGAAGATCTGCAT 1138
>seq2432
Length=89687
Score = 95.1 bits (104), Expect = 4e-14
Identities = 116/158 (73%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
|||||| || || || || |||||||| | || |||||||| ||||||||||| ||
Sbjct 8069 CCATCTACA---TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCC 8125
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| || ||||| || || || || || || || | || || | || ||||| || ||
Sbjct 8126 TTGTCTTGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTG 8185
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||||||| || || || || || || ||||||||
Sbjct 8186 ATTGTCTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223
Score = 89.7 bits (98), Expect = 2e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || || || || | ||| ||||||||||||||||| || ||||| || || || ||
Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|| || ||||| || || | || || | ||| || || || || | ||||| || ||
Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| || ||||| || |||||||||
Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464
>seq362
Length=320851
Score = 93.3 bits (102), Expect = 1e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666
|| || || || ||||| || ||||| ||||| || |||||||| || ||| |||||
Sbjct 3808 ATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTTCAGTTTCACATTT 3867
Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726
||||||| ||||| || ||||| | || || || ||||||||||| || ||||| ||
Sbjct 3868 TCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGTGAGAGTTTTCACG 3927
Query 140727 AAAATCTGCAT 140737
|| | |||||
Sbjct 3928 AAGACTTGCAT 3938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514795312483541
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