Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 1e-22
>seq3
Length=1029188
Score = 122 bits (134), Expect = 1e-22
Identities = 193/274 (70%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535
|||||| || |||||||| ||||| ||||||||||||| || ||||| |||||
Sbjct 36964 GATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCTGGACGCTTATTTCCGCC 37023
Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGC 79595
|||| || || || || ||||||||| | || || ||||| || | | |||| ||
Sbjct 37024 TTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCGTTGGA 37083
Query 79596 GACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTC 79654
| ||||||||| ||| || ||| ||| | || || || || | ||| || | |
Sbjct 37084 GGTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGAT-TTTGTGCACGTTCAGGC 37142
Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714
| || || || | | ||| ||||| | || || | || ||||| ||||||||||||
Sbjct 37143 CAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGATGCCCG 37202
Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748
|||||||||| || ||| | | |||||||||
Sbjct 37203 CGATCGAGTCATCGGCCATTGTCAGCAGGAAGCA 37236
Score = 91.5 bits (100), Expect = 2e-13
Identities = 186/274 (68%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315
|| ||||| || | ||| |||||| || | |||||||||||| ||||| || |
Sbjct 37236 TGCTTCCTGCTGACAATGGCCGATGACTCGATCGCGGGCATCTACGACACGCTGAAACAA 37177
Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTC 19374
|| || | ||||| ||| | | || || || || | || ||| | || ||||| |
Sbjct 37176 TGTGCTCTGATCTCGAAGAGCGCTGGTGGAATTGGCCTGAACGTGCACAAA-ATCCGCGC 37118
Query 19375 GAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCG 19434
| |||| ||| || || |||||||| || ||||| | |||| ||||| ||
Sbjct 37117 TACTGGTTCACTGATTGCCGGCACGAACGGCACCTCCAACGGTCTTATCCCGATGCTTCG 37058
Query 19435 CGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTT 19494
|||| ||||||||| || | || || |||| || || || || || ||||
Sbjct 37057 TGTCTACAACAACACCGCACGATATGTGGACCAAGGCGGAAATAAGCGTCCAGGAGCGTT 36998
Query 19495 CGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528
|||||||||||| || || ||||| |||||| ||
Sbjct 36997 CGCCATCTACCTGGAACCGTGGCATGCGGACATC 36964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548362662925680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |