Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 >seq3 Length=1029188 Score = 122 bits (134), Expect = 1e-22 Identities = 193/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 |||||| || |||||||| ||||| ||||||||||||| || ||||| ||||| Sbjct 36964 GATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCTGGACGCTTATTTCCGCC 37023 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGC 79595 |||| || || || || ||||||||| | || || ||||| || | | |||| || Sbjct 37024 TTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCGTTGGA 37083 Query 79596 GACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTC 79654 | ||||||||| ||| || ||| ||| | || || || || | ||| || | | Sbjct 37084 GGTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGAT-TTTGTGCACGTTCAGGC 37142 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 | || || || | | ||| ||||| | || || | || ||||| |||||||||||| Sbjct 37143 CAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGATGCCCG 37202 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 |||||||||| || ||| | | ||||||||| Sbjct 37203 CGATCGAGTCATCGGCCATTGTCAGCAGGAAGCA 37236 Score = 91.5 bits (100), Expect = 2e-13 Identities = 186/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||| || | ||| |||||| || | |||||||||||| ||||| || | Sbjct 37236 TGCTTCCTGCTGACAATGGCCGATGACTCGATCGCGGGCATCTACGACACGCTGAAACAA 37177 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTC 19374 || || | ||||| ||| | | || || || || | || ||| | || ||||| | Sbjct 37176 TGTGCTCTGATCTCGAAGAGCGCTGGTGGAATTGGCCTGAACGTGCACAAA-ATCCGCGC 37118 Query 19375 GAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCG 19434 | |||| ||| || || |||||||| || ||||| | |||| ||||| || Sbjct 37117 TACTGGTTCACTGATTGCCGGCACGAACGGCACCTCCAACGGTCTTATCCCGATGCTTCG 37058 Query 19435 CGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTT 19494 |||| ||||||||| || | || || |||| || || || || || |||| Sbjct 37057 TGTCTACAACAACACCGCACGATATGTGGACCAAGGCGGAAATAAGCGTCCAGGAGCGTT 36998 Query 19495 CGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 |||||||||||| || || ||||| |||||| || Sbjct 36997 CGCCATCTACCTGGAACCGTGGCATGCGGACATC 36964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548362662925680