Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 >seq3 Length=1029188 Score = 125 bits (138), Expect = 8e-24 Identities = 200/282 (71%), Gaps = 4/282 (1%) Strand=Plus/Minus Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||||||| || | ||| ||||||||||||| ||||||||||| ||||| || | Sbjct 37236 TGCTTCCTGCTGACAATGGCCGATGACTCGATCGCGGGCATCTACGACACGCTGAAACAA 37177 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGC 53451 ||||| | ||||| ||| | | ||||| || || | || ||| | || |||| || Sbjct 37176 TGTGCTCTGATCTCGAAGAGCGCTGGTGGAATTGGCCTGAACGTGCACAAAA-TCCGCGC 37118 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 | || ||| || || ||||||||| | || | || | | || ||||| || Sbjct 37117 TACTGGTTCACTGATTGCCGGCACGAACGGCACCTCCAACGGTCTTATCCCGATGCTTCG 37058 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570 |||| ||||||||| || || || || |||| || || ||||| | ||| | ||| Sbjct 37057 TGTCTACAACAACACCGCACGATATGTGGACCAAGGCGGAAATAAGCGTCCAGGAG-CGT 36999 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||||||||||| || |||||||| || ||||| | |||| Sbjct 36998 TCGCCATCTACCTGGAACCGTGGCATGCGGACATCTTTGAGT 36957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547054249790600