Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 8e-24
>seq3
Length=1029188
Score = 125 bits (138), Expect = 8e-24
Identities = 200/282 (71%), Gaps = 4/282 (1%)
Strand=Plus/Minus
Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392
||||||||| || | ||| ||||||||||||| ||||||||||| ||||| || |
Sbjct 37236 TGCTTCCTGCTGACAATGGCCGATGACTCGATCGCGGGCATCTACGACACGCTGAAACAA 37177
Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGC 53451
||||| | ||||| ||| | | ||||| || || | || ||| | || |||| ||
Sbjct 37176 TGTGCTCTGATCTCGAAGAGCGCTGGTGGAATTGGCCTGAACGTGCACAAAA-TCCGCGC 37118
Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511
| || ||| || || ||||||||| | || | || | | || ||||| ||
Sbjct 37117 TACTGGTTCACTGATTGCCGGCACGAACGGCACCTCCAACGGTCTTATCCCGATGCTTCG 37058
Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570
|||| ||||||||| || || || || |||| || || ||||| | ||| | |||
Sbjct 37057 TGTCTACAACAACACCGCACGATATGTGGACCAAGGCGGAAATAAGCGTCCAGGAG-CGT 36999
Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
||||||||||||| || |||||||| || ||||| | ||||
Sbjct 36998 TCGCCATCTACCTGGAACCGTGGCATGCGGACATCTTTGAGT 36957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547054249790600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |