Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq153 149 7e-31
seq1193 131 2e-25
seq12137 122 1e-22
seq2432 116 4e-21
seq405 111 2e-19
seq362 84.2 2e-11
>seq153
Length=425603
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || |||||| | ||||| ||||| | || || |||||| | ||
Sbjct 198093 AATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATC 198034
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | || ||||||| || || ||||||||||| |||||||| ||||||||
Sbjct 198033 TGAGACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCA 197974
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||||| || ||||| | || || |||||||||| | || || ||||||||||
Sbjct 197973 GCAACGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATAA 197914
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631
|||| || || |||| || ||||| || | || ||||| ||||
Sbjct 197913 CATCCAGAAAGAGTCCATACTGCATCTGGTGCTTCGGCTTCGTGGTG 197867
>seq1193
Length=173371
Score = 131 bits (144), Expect = 2e-25
Identities = 116/145 (80%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || ||||||||||| || || |||||||| || |
Sbjct 29324 AATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTC 29383
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| ||| ||||||| || || |||||||| || || || |||||||| ||
Sbjct 29384 TGACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCA 29443
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| ||||| |||||||||||||||
Sbjct 29444 GCAACGTCTGATTTTTGCTGGTAAG 29468
Score = 116 bits (128), Expect = 4e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || ||| | ||||| ||||| || || || ||||||||| | |
Sbjct 29623 ATGCAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTCT 29682
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||||| || |||||||||||||| || || |||||||| ||
Sbjct 29683 GACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAA 29742
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
|||||||| |||||||| ||||
Sbjct 29743 CAGCGTCTCATTTTTGCCGGTA 29764
Score = 100 bits (110), Expect = 3e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || || || ||||| || || | ||||||||| |
Sbjct 31226 AATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTC 31285
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | || ||||||| || || || |||||||| || ||||| ||||||||
Sbjct 31286 TGACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 31345
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| || || || || || ||||||
Sbjct 31346 GCAACGACTCATCTTCGCCGGTAAG 31370
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| |||||||| || || ||||| || || | || || || ||
Sbjct 29029 AATGCAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATC 29088
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | || ||||||| || || || ||||||||||| || |||||||||||
Sbjct 29089 CGACACGATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCA 29148
Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546
|||||| || || || || |||
Sbjct 29149 GCAGCGACTCATCTTCGCCGGT 29170
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| | || || ||||| || || || ||||||||| |
Sbjct 30225 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACGATCACCCTAGAGGTTGAGGCCTC 30284
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | ||| | ||||| || || || |||||||| || ||||| ||||||||
Sbjct 30285 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 30344
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| || || || || || ||||||
Sbjct 30345 GCAACGACTCATCTTCGCCGGTAAG 30369
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || || || ||||| || || | ||||||||| |
Sbjct 30923 AATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTC 30982
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | || ||||||| || || || |||||||| ||||| || ||||| ||
Sbjct 30983 TGACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 31042
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||| | || || ||||| ||||||
Sbjct 31043 GCAAAGACTCATCTTTGCAGGTAAG 31067
Score = 93.3 bits (102), Expect = 5e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || || || || || || || || || || ||||| || | |
Sbjct 27093 ATGCAAATCTTCGTGAAAACCCTCACGGGAAAAACGATCACACTCGAGGTGGAAGCCTCT 27152
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| ||||||| || || ||||||||||| |||||||| || || |||
Sbjct 27153 GATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCGGATCAG 27212
Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || || || || ||| ||
Sbjct 27213 CAACGACTCATCTTCGCCGGTTAG 27236
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| | ||||| ||||| || || | |||||||| ||
Sbjct 31526 AATGCAAATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCTTAGAGGTTGAAGCATC 31585
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | ||| | ||||| || || || |||||||| || ||||| ||||||||
Sbjct 31586 TGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 31645
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| || || || || || ||||
Sbjct 31646 GCAACGACTCATCTTCGCCGGTA 31668
Score = 89.7 bits (98), Expect = 6e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||| || || | || || || |
Sbjct 32191 ATGCAAATCTTCGTGAAGACTTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTCC 32250
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || || || || ||||||||||| || |||||||||||||||
Sbjct 32251 GATACGATCGAGAATGTCAAAGCGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 32310
Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549
||||| || || || || ||||||
Sbjct 32311 CAGCGACTCATCTTCGCAGGTAAG 32334
>seq12137
Length=1209
Score = 122 bits (134), Expect = 1e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||||| || || ||||| || ||||| || || ||| |
Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| ||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
|| || || || ||||| ||| |||
Sbjct 1018 CAACGACTGATCTTTGCAGGTGAGC 994
>seq2432
Length=89687
Score = 116 bits (128), Expect = 4e-21
Identities = 122/159 (77%), Gaps = 1/159 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||||| || || ||||| || || || || || ||| |
Sbjct 8223 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCA 8164
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || ||||| ||||||||||||||||||||||| |||
Sbjct 8163 GACACCATCGAAAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 8104
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGA-GGATGA 27563
||||| | || ||||| |||||||| | || ||||||
Sbjct 8103 CAGCGATTGATCTTTGCGGGTAAGCATGTAGATGGATGA 8065
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || || ||||| || || ||||| ||||| || ||||| ||| |
Sbjct 8534 AATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTC 8475
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | ||| | || || || ||||| |||||||| ||||| |||||||||||
Sbjct 8474 CGACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCA 8415
Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546
|||||| || || || || |||
Sbjct 8414 GCAGCGACTGATCTTCGCAGGT 8393
Score = 96.9 bits (106), Expect = 4e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||||| || || ||||| || ||||| ||||| || |
Sbjct 4642 ATGCAGATCTTCGTAAAGACGCTCACTGGGAAGACCATCACTCTGGAGGTGGAAGCTTCA 4583
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4582 GACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGATCAG 4523
Query 27526 CAGCGTCTAATTTTTGCTGGT 27546
||||| || || || || |||
Sbjct 4522 CAGCGACTGATCTTCGCAGGT 4502
>seq405
Length=308142
Score = 111 bits (122), Expect = 2e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463
||||||||||||| || ||||| || || || ||||| || || || ||||| || |
Sbjct 21223 TAATGCAAATCTTCGTGAAGACTCTCACGGGAAAGACGATCACCCTCGAGGTCGAAGCCT 21282
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| | || | ||| ||||||| || || |||||||||||||| |||||||||||||
Sbjct 21283 CGGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCAGACC 21342
Query 27524 AGCAGCGTCTAATTTTTGCTGGTA 27547
| ||||| || || ||||| ||||
Sbjct 21343 AACAGCGACTGATCTTTGCAGGTA 21366
>seq362
Length=320851
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||| |||| || || || || ||||| ||||| | || || |||||||| | |
Sbjct 3938 ATGCAAGTCTTCGTGAAAACTCTCACCGGAAAGACCGTCACGCTCCAGGTTGAGCCCTCT 3879
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| |||| |||| || |||||||||||||| || ||||| || || ||
Sbjct 3878 GACACGATTGAAAATGTGAAACTGAAGATTCAGGACAAGGAAGGGATTCCGCCCGATCAA 3819
Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549
||||| || |||| || ||| ||
Sbjct 3818 CAGCGCCTCATTTACGCAGGTGAG 3795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570141823374640
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