Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq153 149 7e-31 seq1193 131 2e-25 seq12137 122 1e-22 seq2432 116 4e-21 seq405 111 2e-19 seq362 84.2 2e-11 >seq153 Length=425603 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||| | ||||| ||||| | || || |||||| | || Sbjct 198093 AATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATC 198034 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || ||||||| || || ||||||||||| |||||||| |||||||| Sbjct 198033 TGAGACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCA 197974 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || ||||| | || || |||||||||| | || || |||||||||| Sbjct 197973 GCAACGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATAA 197914 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 |||| || || |||| || ||||| || | || ||||| |||| Sbjct 197913 CATCCAGAAAGAGTCCATACTGCATCTGGTGCTTCGGCTTCGTGGTG 197867 >seq1193 Length=173371 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || |||||||| || | Sbjct 29324 AATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTC 29383 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| ||||||| || || |||||||| || || || |||||||| || Sbjct 29384 TGACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCA 29443 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| ||||| ||||||||||||||| Sbjct 29444 GCAACGTCTGATTTTTGCTGGTAAG 29468 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || ||| | ||||| ||||| || || || ||||||||| | | Sbjct 29623 ATGCAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTCT 29682 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || |||||||||||||| || || |||||||| || Sbjct 29683 GACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAA 29742 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| |||||||| |||| Sbjct 29743 CAGCGTCTCATTTTTGCCGGTA 29764 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || || | ||||||||| | Sbjct 31226 AATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTC 31285 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || ||||||| || || || |||||||| || ||||| |||||||| Sbjct 31286 TGACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 31345 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || || || || || |||||| Sbjct 31346 GCAACGACTCATCTTCGCCGGTAAG 31370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| |||||||| || || ||||| || || | || || || || Sbjct 29029 AATGCAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATC 29088 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || || ||||||||||| || ||||||||||| Sbjct 29089 CGACACGATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCA 29148 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| || || || || ||| Sbjct 29149 GCAGCGACTCATCTTCGCCGGT 29170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || || ||||| || || || ||||||||| | Sbjct 30225 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACGATCACCCTAGAGGTTGAGGCCTC 30284 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || || || |||||||| || ||||| |||||||| Sbjct 30285 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 30344 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || || || || || |||||| Sbjct 30345 GCAACGACTCATCTTCGCCGGTAAG 30369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || || | ||||||||| | Sbjct 30923 AATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTC 30982 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || ||||||| || || || |||||||| ||||| || ||||| || Sbjct 30983 TGACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 31042 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || ||||| |||||| Sbjct 31043 GCAAAGACTCATCTTTGCAGGTAAG 31067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || || || || || || ||||| || | | Sbjct 27093 ATGCAAATCTTCGTGAAAACCCTCACGGGAAAAACGATCACACTCGAGGTGGAAGCCTCT 27152 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| || || ||||||||||| |||||||| || || ||| Sbjct 27153 GATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCGGATCAG 27212 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || || || ||| || Sbjct 27213 CAACGACTCATCTTCGCCGGTTAG 27236 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | ||||| ||||| || || | |||||||| || Sbjct 31526 AATGCAAATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCTTAGAGGTTGAAGCATC 31585 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||||| || || || |||||||| || ||||| |||||||| Sbjct 31586 TGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 31645 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| || || || || || |||| Sbjct 31646 GCAACGACTCATCTTCGCCGGTA 31668 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || | || || || | Sbjct 32191 ATGCAAATCTTCGTGAAGACTTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTCC 32250 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || || || ||||||||||| || ||||||||||||||| Sbjct 32251 GATACGATCGAGAATGTCAAAGCGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 32310 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || || || |||||| Sbjct 32311 CAGCGACTCATCTTCGCAGGTAAG 32334 >seq12137 Length=1209 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || || ||||| || ||||| || || ||| | Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || || || || ||||| ||| ||| Sbjct 1018 CAACGACTGATCTTTGCAGGTGAGC 994 >seq2432 Length=89687 Score = 116 bits (128), Expect = 4e-21 Identities = 122/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || || ||||| || || || || || ||| | Sbjct 8223 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCA 8164 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||| ||||||||||||||||||||||| ||| Sbjct 8163 GACACCATCGAAAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 8104 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGA-GGATGA 27563 ||||| | || ||||| |||||||| | || |||||| Sbjct 8103 CAGCGATTGATCTTTGCGGGTAAGCATGTAGATGGATGA 8065 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || ||||| || || ||||| ||||| || ||||| ||| | Sbjct 8534 AATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTC 8475 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || || || ||||| |||||||| ||||| ||||||||||| Sbjct 8474 CGACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCA 8415 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| || || || || ||| Sbjct 8414 GCAGCGACTGATCTTCGCAGGT 8393 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || || ||||| || ||||| ||||| || | Sbjct 4642 ATGCAGATCTTCGTAAAGACGCTCACTGGGAAGACCATCACTCTGGAGGTGGAAGCTTCA 4583 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 4582 GACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGATCAG 4523 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || || || ||| Sbjct 4522 CAGCGACTGATCTTCGCAGGT 4502 >seq405 Length=308142 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||||||||||||| || ||||| || || || ||||| || || || ||||| || | Sbjct 21223 TAATGCAAATCTTCGTGAAGACTCTCACGGGAAAGACGATCACCCTCGAGGTCGAAGCCT 21282 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | ||| ||||||| || || |||||||||||||| ||||||||||||| Sbjct 21283 CGGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCAGACC 21342 Query 27524 AGCAGCGTCTAATTTTTGCTGGTA 27547 | ||||| || || ||||| |||| Sbjct 21343 AACAGCGACTGATCTTTGCAGGTA 21366 >seq362 Length=320851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||| |||| || || || || ||||| ||||| | || || |||||||| | | Sbjct 3938 ATGCAAGTCTTCGTGAAAACTCTCACCGGAAAGACCGTCACGCTCCAGGTTGAGCCCTCT 3879 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||| || |||||||||||||| || ||||| || || || Sbjct 3878 GACACGATTGAAAATGTGAAACTGAAGATTCAGGACAAGGAAGGGATTCCGCCCGATCAA 3819 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || |||| || ||| || Sbjct 3818 CAGCGCCTCATTTACGCAGGTGAG 3795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570141823374640