Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1193 93.3 4e-14 seq2432 91.5 1e-13 seq362 89.7 4e-13 seq12137 86.0 5e-12 seq153 82.4 7e-11 >seq1193 Length=173371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || ||||| |||||| | || Sbjct 29325 ATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTCT 29384 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || || || |||||||||||||| || || ||||| Sbjct 29385 GACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAG 29444 Query 27108 CAGCGT 27113 || ||| Sbjct 29445 CAACGT 29450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| ||||||| ||| | || || || || || || | || Sbjct 29622 CATGCAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTC 29681 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || || ||||| ||||| |||||||| || || ||||| Sbjct 29682 TGACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCA 29741 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||||| | || | ||||| Sbjct 29742 ACAGCGTCTCATTTTTGCCGG 29762 >seq2432 Length=89687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| ||||| || || || || ||| | || || || || || ||| | || Sbjct 6463 ATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTCA 6404 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| || || || || ||||| Sbjct 6403 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCAG 6344 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||||| || | |||||| || Sbjct 6343 CAGCGTTTGATTTTCGCCGGTAA 6321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||| ||||| || || || ||||| || || || ||| | ||||| || || ||||| | Sbjct 8537 CGCAATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGC 8478 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||||| | || |||| |||||| || ||||||||||| ||||| || || || || Sbjct 8477 GTCCGACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGA 8418 Query 27104 TCAACAGCG 27112 || ||||| Sbjct 8417 CCAGCAGCG 8409 >seq362 Length=320851 Score = 89.7 bits (98), Expect = 4e-13 Identities = 119/163 (73%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 26967 AAATTT--TTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA 27024 |||||| ||| | |||| || ||||| | || || |||||||| ||||| ||| | Sbjct 3960 AAATTTGCTTTCAGATATAGGC-ATGCAAGTCTTCGTGAAAACTCTCACCGGAAAGACCG 3902 Query 27025 TTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACA 27084 | || || | || || || || ||| ||||||| | || |||| || ||||| |||| Sbjct 3901 TCACGCTCCAGGTTGAGCCCTCTGACACGATTGAAAATGTGAAACTGAAGATTCAGGACA 3842 Query 27085 AAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 | ||||| || || |||||||||||||| | || ||||| || Sbjct 3841 AGGAAGGGATTCCGCCCGATCAACAGCGCCTCATTTACGCAGG 3799 >seq12137 Length=1209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| ||||| ||||| || || ||| | || || | || || ||| | ||| Sbjct 830 ATGCAGATATTCGTAAAGACTCTTACTGGAAAGACAATCACCTTGGAGGTCGAAGCTTCC 771 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || |||||||| ||||| || || || |||||| Sbjct 770 GATACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAA 711 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | ||||| Sbjct 710 CAGCGATTGATCTTTGCCGG 691 >seq153 Length=425603 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 || ||||| || ||||| || |||| | ||| | || || | ||||| | | | || Sbjct 197864 ATTCAGATTTTCGTAAAGACCTTGACTGCGAAGACCATCACATTGGAAGTAGGAGCCTCT 197805 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| |||||| || || || ||||| |||||| | || || | ||| Sbjct 197804 GATACGATTGAGAATGTCAAAGCGAAGATACAGGACAAGGAAGGCGTTCCTCCAGGTCAG 197745 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| |||| | ||||| | | ||||||| |||||| Sbjct 197744 CAGCGACTCATCTTCGCAGGCAGC----TTGAAGATGGACGTATTCTTTCCGACTACAAC 197689 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || | ||||||||||| ||||||| || | ||| | || || ||| Sbjct 197688 ATGTAGAAGGAGTCGACTCTACATTTCGTGCTTCGTCTTCGTGGAGGC 197641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434789843557440