Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 93.3 4e-14
seq2432 91.5 1e-13
seq362 89.7 4e-13
seq12137 86.0 5e-12
seq153 82.4 7e-11
>seq1193
Length=173371
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||||||||||| | || || ||||| |||||| | ||
Sbjct 29325 ATGCAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTCT 29384
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||||| || || || || || |||||||||||||| || || |||||
Sbjct 29385 GACACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAG 29444
Query 27108 CAGCGT 27113
|| |||
Sbjct 29445 CAACGT 29450
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || ||||| ||||||| ||| | || || || || || || | ||
Sbjct 29622 CATGCAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTC 29681
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| |||| || || || ||||| ||||| |||||||| || || |||||
Sbjct 29682 TGACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCA 29741
Query 27107 ACAGCGTTTAATATACGCCGG 27127
||||||| | || | |||||
Sbjct 29742 ACAGCGTCTCATTTTTGCCGG 29762
>seq2432
Length=89687
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| ||||| || || || || ||| | || || || || || ||| | ||
Sbjct 6463 ATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTCA 6404
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || ||||||||||| || || || || |||||
Sbjct 6403 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCAG 6344
Query 27108 CAGCGTTTAATATACGCCGGCAA 27130
|||||||| || | |||||| ||
Sbjct 6343 CAGCGTTTGATTTTCGCCGGTAA 6321
Score = 89.7 bits (98), Expect = 4e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
||| ||||| || || || ||||| || || || ||| | ||||| || || ||||| |
Sbjct 8537 CGCAATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGC 8478
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
||||||| | || |||| |||||| || ||||||||||| ||||| || || || ||
Sbjct 8477 GTCCGACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGA 8418
Query 27104 TCAACAGCG 27112
|| |||||
Sbjct 8417 CCAGCAGCG 8409
>seq362
Length=320851
Score = 89.7 bits (98), Expect = 4e-13
Identities = 119/163 (73%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 26967 AAATTT--TTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA 27024
|||||| ||| | |||| || ||||| | || || |||||||| ||||| ||| |
Sbjct 3960 AAATTTGCTTTCAGATATAGGC-ATGCAAGTCTTCGTGAAAACTCTCACCGGAAAGACCG 3902
Query 27025 TTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACA 27084
| || || | || || || || ||| ||||||| | || |||| || ||||| ||||
Sbjct 3901 TCACGCTCCAGGTTGAGCCCTCTGACACGATTGAAAATGTGAAACTGAAGATTCAGGACA 3842
Query 27085 AAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127
| ||||| || || |||||||||||||| | || ||||| ||
Sbjct 3841 AGGAAGGGATTCCGCCCGATCAACAGCGCCTCATTTACGCAGG 3799
>seq12137
Length=1209
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| ||||| ||||| || || ||| | || || | || || ||| | |||
Sbjct 830 ATGCAGATATTCGTAAAGACTCTTACTGGAAAGACAATCACCTTGGAGGTCGAAGCTTCC 771
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| ||||| || || |||||||| ||||| || || || ||||||
Sbjct 770 GATACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAA 711
Query 27108 CAGCGTTTAATATACGCCGG 27127
||||| || || | |||||
Sbjct 710 CAGCGATTGATCTTTGCCGG 691
>seq153
Length=425603
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|| ||||| || ||||| || |||| | ||| | || || | ||||| | | | ||
Sbjct 197864 ATTCAGATTTTCGTAAAGACCTTGACTGCGAAGACCATCACATTGGAAGTAGGAGCCTCT 197805
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||||| |||||| || || || ||||| |||||| | || || | |||
Sbjct 197804 GATACGATTGAGAATGTCAAAGCGAAGATACAGGACAAGGAAGGCGTTCCTCCAGGTCAG 197745
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| |||| | ||||| | | ||||||| ||||||
Sbjct 197744 CAGCGACTCATCTTCGCAGGCAGC----TTGAAGATGGACGTATTCTTTCCGACTACAAC 197689
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| | ||||||||||| ||||||| || | ||| | || || |||
Sbjct 197688 ATGTAGAAGGAGTCGACTCTACATTTCGTGCTTCGTCTTCGTGGAGGC 197641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434789843557440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |