Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq153 176 1e-38 seq405 141 2e-28 seq1193 127 5e-24 seq362 127 5e-24 seq2432 114 3e-20 seq12137 113 1e-19 >seq153 Length=425603 Score = 176 bits (194), Expect = 1e-38 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 210887 ATTTCA--ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCC 210944 |||||| |||||| | || || || || || |||||||||| ||||||||||| || Sbjct 197863 ATTTCACCACGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCT 197922 Query 210945 GCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGA 211004 | ||| || |||||| || ||||| ||| | || ||||| || ||||| ||||| || Sbjct 197923 GAAAGAGTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGT 197982 Query 211005 GGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCA 211064 |||| ||||||||||||||||||||| |||||||| ||||| || ||||| || | Sbjct 197983 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGA 198042 Query 211065 ACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||| |||||||||| || | ||||| || || | ||||||| Sbjct 198043 ACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093 Score = 120 bits (132), Expect = 7e-22 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | || ||||| ||||| || | ||||| || || | ||| Sbjct 197644 TCCACGAAGACGAAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAG 197703 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 | | ||||||||| |||||| |||||||||| || || || || | |||||||| Sbjct 197704 AATACGTCCATCTTCAAGCTGC----CTGCGAAGATGAGTCGCTGCTGACCTGGAGGAAC 197759 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||| ||||| ||| || || || || || |||||| | | || || Sbjct 197760 GCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTC 197819 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 | ||||| ||||| | || | |||||||| || | ||| |||| Sbjct 197820 CAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATTT 197866 >seq405 Length=308142 Score = 141 bits (156), Expect = 2e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || || |||||||| ||||||| || ||||||||||||||||| Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||| ||||| ||| ||| |||||||| ||||||||||||||||||||| Sbjct 21304 TTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGAGA 21245 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 21244 GTCTTCACGAAGATTTGCATT 21224 >seq1193 Length=173371 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || ||||| || || || |||| |||||||||||||||||||||| Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || || || || |||||| ||| |||||||| |||||||| ||||||||||| Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| ||||| ||| |||||||| || |||||||||||||| || Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | |||||| || || | |||||| Sbjct 30249 CAAAGTCTTCACGAAGATTTGCATT 30225 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| ||||| ||||||||| |||||||| | ||||| ||||| || || Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | |||||| Sbjct 31250 CAGTGTCTTCACGAAGATTTGCATT 31226 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || || || || ||||| || ||||| | |||||||||||||| ||||| Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| ||||| ||||||||| ||||||||||| |||||||||||||| || | Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| ||||| ||||| || | ||| || || || || | |||||||||||| |||||||| Sbjct 31067 CTTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 31008 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| ||||| ||||||||| |||||||| | ||||| ||||| || || Sbjct 31007 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 30948 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | |||||| Sbjct 30947 CAGTGTCTTCACGAAGATTTGCATT 30923 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 || ||| ||||||||||| || || || ||||| ||||||| ||||||||||||||||| Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| ||| || || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || | |||||| || || | ||||| Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTGCAT 32191 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||| |||||||| ||||||||| | ||||| |||||||| || | Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || || ||||| || || ||||| | ||||| |||||||||||||| Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| || || || ||||||||| ||| ||||| || ||||||||||| || || Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | |||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATT 29324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||||||||| | ||| || || ||||||| ||||||||||| |||||||| Sbjct 30065 CTTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 30006 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| || || ||| ||| || || | ||||| ||||| || || Sbjct 30005 CGCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGT 29946 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 29945 CAAGGTCTTCACGAAGATTTGCAT 29922 >seq362 Length=320851 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||| | || ||||| ||||| || || |||| |||||||||||||| ||||| || Sbjct 3799 CCTGCGTAAATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTTCAGT 3858 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||| || ||||||||| ||||||| ||| |||| |||||||| |||||| Sbjct 3859 TTCACATTTTCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGTGAGA 3918 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || || ||||| Sbjct 3919 GTTTTCACGAAGACTTGCAT 3938 >seq2432 Length=89687 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| | || || || || ||||||| ||| |||||||| || ||| Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||| || ||||||||||||||||| ||| || || || || ||||| |||||||| Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | |||||| Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCAT 8223 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || || || || || || |||| || ||||||||||||||||| Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||| ||||| || ||| ||||| |||||||| ||||| || ||||| Sbjct 4563 TTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGC 4622 Query 211095 GTCTTTACAAACACCTGCAT 211114 |||||||| || | |||||| Sbjct 4623 GTCTTTACGAAGATCTGCAT 4642 Score = 111 bits (122), Expect = 4e-19 Identities = 118/151 (78%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| ||||||||||| | || ||||| || || |||| ||||||||||| |||||| Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 4857 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTC--AGAGCTTT-CAACCT-CGAGAGTGATCGTCTT 211084 || || ||||| ||||| || || | |||||| | |||| | || ||||| ||||| Sbjct 4858 TTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGTCTT 4917 Query 211085 TCCCGTGA-GAGTCTTTACAAACACCTGCAT 211114 ||| |||| |||||||||| || | |||||| Sbjct 4918 TCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || ||||| || | || || || |||||||||| || || ||||| ||||||| Sbjct 6319 GCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCT 6378 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || || || ||||||||||| ||| ||| ||||| || ||||| ||||| || | Sbjct 6379 TGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAG 6438 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 |||| |||||||| || | ||||||| Sbjct 6439 TGAGCGTCTTTACGAATATCTGCATT 6464 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || || || ||||| ||||| | |||||||||||| || ||||| | Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||| ||||| || || |||||||| || || ||||| || || || Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | |||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 >seq12137 Length=1209 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || ||||||| ||| |||||||| || || || Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||||||||| ||| || || || |||||||| |||||||| ||||| Sbjct 1059 TTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGC 1118 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 1119 GTCTTAACGAAGATCTGCAT 1138 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||| || || ||||| | || ||||| || || |||| ||||||||||| |||||| Sbjct 685 TGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 744 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| ||||| || || || ||| ||||| | ||||| |||||||| Sbjct 745 TTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCA 804 Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||||||||| || | ||||||| Sbjct 805 GTAAGAGTCTTTACGAATATCTGCATT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158800803387155