Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1193 131 4e-25 seq405 114 3e-20 seq153 114 3e-20 seq362 100 7e-16 seq12137 96.9 8e-15 seq2432 95.1 3e-14 >seq1193 Length=173371 Score = 131 bits (144), Expect = 4e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| |||||||| ||||| || ||||| |||||||||||||||||||| Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| ||||| |||| || || |||| ||||||||||| || || Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 |||||| || | ||| | ||||||| Sbjct 30249 CAAAGTCTTCACGAAGATTTGCATT 30225 Score = 127 bits (140), Expect = 5e-24 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 225545 CCAAAGTT--CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGG 225602 |||||||| |||| || ||| | | | || |||||||| |||||||| ||||| || Sbjct 31697 CCAAAGTTTACTCCTATTATCTGGAGACGTACCGGCGAAGATGAGTCGTTGCTGGTCTGG 31638 Query 225603 CGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTC 225662 ||||| |||||||||||||||||||| ||| ||| ||||| ||||| || | ||| Sbjct 31637 TGGAATGCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCAGATGCTTC 31578 Query 225663 CACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| ||||| ||||| || ||||| || || | ||| | ||||||| Sbjct 31577 AACCTCTAAGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATTTGCATT 31526 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| |||||||| ||||| || ||||| |||||||||||||||||||| Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||||| ||||| |||| || || ||||| ||||| ||||| || || Sbjct 31310 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 31251 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | ||||||| Sbjct 31250 CAGTGTCTTCACGAAGATTTGCATT 31226 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||||| ||| || || || ||||| |||||||||||||||||||| Sbjct 30065 CTTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 30006 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| || || |||| ||| || || || ||||| ||||| || || Sbjct 30005 CGCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGT 29946 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | ||| | |||||| Sbjct 29945 CAAGGTCTTCACGAAGATTTGCAT 29922 Score = 116 bits (128), Expect = 9e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 || ||| || |||||||| ||||| || ||||| || ||||||||||||||||| ||||| Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| || ||| ||||| || || |||| ||| || || || ||||| ||||| || Sbjct 32277 CTTCGCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCC 32218 Query 225687 CGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || | ||| | |||||| Sbjct 32217 AGTCAAAGTCTTCACGAAGATTTGCAT 32191 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| |||||||| || || || ||||| ||||||||||| ||||||||| | Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| || || || || |||| |||||| || | |||||||| || ||||| | Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093 Score = 104 bits (114), Expect = 6e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| || || ||||| |||| |||||| || | |||||||||||||| || Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | ||||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCATT 29324 Score = 104 bits (114), Expect = 6e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| |||| ||| || || || || || |||||||||||||||||||| Sbjct 31067 CTTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 31008 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||||| ||||| |||| || || ||||| ||||| ||||| || || Sbjct 31007 CGCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGT 30948 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | ||||||| Sbjct 30947 CAGTGTCTTCACGAAGATTTGCATT 30923 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| ||||| || ||||| || || || || ||||||||||||||||| | Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| ||||| || | ||| || || || ||||| ||||| || |||| Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 29049 GTCTTCACAAAGATCTGCATT 29029 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || || || ||||| || || || || ||||||||||| || ||||| | Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| ||||| |||| || || || | ||||||||||| || ||||| Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623 >seq405 Length=308142 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| ||||| |||||||| || ||||| || |||||||| |||||||| | Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||| ||||| |||| ||| || || | ||||||||||| ||||| | | Sbjct 21304 TTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGAGA 21245 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 21244 GTCTTCACGAAGATTTGCATT 21224 >seq153 Length=425603 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || |||| ||||| |||| || || || | | ||| Sbjct 197871 ACGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGT 197930 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||| || ||||| || | || ||||| || ||||| ||||| || ||||| || Sbjct 197931 GTGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCC 197990 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| ||||| || || || | || || |||| Sbjct 197991 TTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCAGATGCTTGAACCTCTAG 198050 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||||| || ||||| || || | ||| | |||||| Sbjct 198051 GGTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTGCATT 198093 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| || || || | | ||||| |||| | | | Sbjct 197647 ACGAAGACGAAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAAAGAAT 197706 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||| | |||||||| ||||| || || | || |||| || Sbjct 197707 ACGTCCATCTTCAAGCTGCCT----GCGAAGATGAGTCGCTGCTGACCTGGAGGAACGCC 197762 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| || ||| || || || || |||| | | || || || Sbjct 197763 TTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACTTCCAA 197822 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| ||||| | ||||| || |||| ||| | || |||| Sbjct 197823 TGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATTT 197866 >seq362 Length=320851 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||| | || || || ||||| ||||||||||| ||||||||||| || ||||| | Sbjct 3799 CCTGCGTAAATGAGGCGCTGTTGATCGGGCGGAATCCCTTCCTTGTCCTGAATCTTCAGT 3858 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||| || ||||| |||| || || | | ||||| ||||| || || | | Sbjct 3859 TTCACATTTTCAATCGTGTCAGAGGGCTCAACCTGGAGCGTGACGGTCTTTCCGGTGAGA 3918 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| |||||||| Sbjct 3919 GTTTTCACGAAGACTTGCAT 3938 >seq12137 Length=1209 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| |||| || || ||||| | ||| ||||| || || ||||| |||||||||||| Sbjct 679 TCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCT 738 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| || || || | ||| || || || ||||| ||| Sbjct 739 TGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTC 798 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| |||| ||| | |||||| Sbjct 799 TTTCCAGTAAGAGTCTTTACGAATATCTGCATT 831 Score = 91.5 bits (100), Expect = 4e-13 Identities = 117/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 225555 CCCATCT-TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||| |||| ||| || || ||||| |||||||| || || || ||||| || | Sbjct 979 CCCATCCATCTAAAGGCTCACCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCT 1038 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 |||||||||| || || ||||||| |||||||||||||||| || || || | | Sbjct 1039 CCTTGTCTTGAATTTTGGCCTTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAG 1098 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||| || || | || || | ||| | ||||| Sbjct 1099 TGATGGTCTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 1138 >seq2432 Length=89687 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| || || ||||| | ||| || || || || ||||| || ||||||||| Sbjct 8072 TCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 8131 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || ||||||||||||||||| || || || | ||||| ||| Sbjct 8132 TGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTC 8191 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 8192 TTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| || ||||| || | || || || || || ||||| || || ||||||||||||| Sbjct 6319 GCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCT 6378 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | ||| ||| |||||||||||||||| ||| || || | ||||| ||||| || | Sbjct 6379 TGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAG 6438 Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714 | | || |||| ||| | |||||| Sbjct 6439 TGAGCGTCTTTACGAATATCTGCATT 6464 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| ||||| || ||||| || || || |||||||||||||| ||||| Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||| ||||| || | ||||| || | || || ||||| || || | Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | ||||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| | ||| ||||| || || ||||| |||||||||||||||||| Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 4857 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTG--AGGTTT-CCACGTCTAA-CGTGATCGTCTT 225683 || ||| || ||||| || || | || ||| | || || || |||||| ||||| Sbjct 4858 TTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGTCTT 4917 Query 225684 GCCCGTCA-AAGTTTTTATGAACACTTGCAT 225713 || || | ||| |||| ||| | ||||| Sbjct 4918 TCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192169890251018