Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2432 93.3 1e-13 seq12137 91.5 3e-13 >seq2432 Length=89687 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| || | ||||||||| | | |||||||||||| |||||||| || | Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | |||| || ||| || || || ||||| || || || || || Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || || ||||||| |||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 >seq12137 Length=1209 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || ||||| || | ||||| || | | ||||| ||||| ||||||||||| Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | ||||||| ||| ||||| ||||| || || || || ||||| Sbjct 1059 TTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGC 1118 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| |||||| Sbjct 1119 GTCTTAACGAAGATCTGCAT 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153471218619137