Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12137 138 2e-27 seq405 138 2e-27 seq2432 132 1e-25 seq1193 125 1e-23 seq153 96.9 7e-15 >seq12137 Length=1209 Score = 138 bits (152), Expect = 2e-27 Identities = 128/161 (80%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 282941 GCCATCC-TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 ||||||| |||| || | |||||||||||||| || ||||| || ||||| || | Sbjct 671 GCCATCCATCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTT 730 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 |||||||||||||||| || || ||| | ||||| || || ||||||||||| || | | Sbjct 731 CCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGG 790 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||| ||||| || || | |||||| ||||||||||||||| Sbjct 791 TGATTGTCTTTCCAGTAAGAGTCTTTACGAATATCTGCATT 831 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||||| ||||| || || ||||| |||||||||||||| || || || Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || || |||||||| |||||||| ||||| || || | Sbjct 1059 TTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGC 1118 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||||||||| |||||||| Sbjct 1119 GTCTTAACGAAGATCTGCAT 1138 >seq405 Length=308142 Score = 138 bits (152), Expect = 2e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||||| || |||||||| ||||| ||||||||||| |||||||| || Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| |||||||| ||||| ||||||||||| ||||| | | Sbjct 21304 TTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGAGA 21245 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 21244 GTCTTCACGAAGATTTGCATT 21224 >seq2432 Length=89687 Score = 132 bits (146), Expect = 1e-25 Identities = 125/158 (79%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 282943 CATCC-TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| |||| || || || ||||||||||| || || || || ||||| |||||| Sbjct 8066 CATCCATCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCC 8125 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||| |||||||| || ||| | ||||| ||||| || || |||||||| || ||| Sbjct 8126 TTGTCTTGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTG 8185 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | ||||||||||| |||||||| Sbjct 8186 ATTGTCTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| || |||||||| || || ||| ||||| ||||| |||||||||||||| Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | ||||| ||||| || |||||||| || || ||||| ||||| || || Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||||||||||||| Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| || || || || ||||| ||||||||||| |||||||| || Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||||||||| |||||||| || || |||||||| ||||| || || | Sbjct 4563 TTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGC 4622 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 4623 GTCTTTACGAAGATCTGCAT 4642 Score = 96.9 bits (106), Expect = 7e-15 Identities = 115/151 (76%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || || |||||||| || ||||| || ||||| || ||||||||||||||| Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 4857 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGA-AGCTT--CGA-CTTCGAGAGTGATCGTCTT 283069 || || || ||| | ||||| || || || ||||| ||| || | || ||||| ||||| Sbjct 4858 TTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGTCTT 4917 Query 283070 ACCCGTCA-AAGTCTTAACGAATATCTGCAT 283099 || || | |||||| ||||| |||||||| Sbjct 4918 TCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| || || ||||| || || || ||||||||||| ||||| ||| Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || || || || ||||| || || ||||| || || | Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513 Query 283080 GTCTTAACGAATATCTGCATT 283100 || |||||||| || |||||| Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534 >seq1193 Length=173371 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | ||||| ||||| ||||| || ||||||||||||||||| Sbjct 30368 TTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTC 30309 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | ||||| ||||| || || || || || || ||||||||||| || ||| Sbjct 30308 GCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGTC 30249 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 |||||||| ||||| || |||||| Sbjct 30248 AAAGTCTTCACGAAGATTTGCATT 30225 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||| | || || ||||| || || |||||||||||||||||||| || Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||||||||| | ||||| ||||| || |||| Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || ||||||||| Sbjct 29049 GTCTTCACAAAGATCTGCATT 29029 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||| | ||||| ||||| ||||| || ||||||||||||||||| || Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | ||||| ||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||| | || || ||||| |||||||| |||||||| |||||||| Sbjct 32333 TTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTC 32274 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | ||||| || || || ||||| ||||| | ||||| ||||| || ||| Sbjct 32273 GCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 32214 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || ||||| Sbjct 32213 AAAGTCTTCACGAAGATTTGCAT 32191 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | ||||| ||||| ||||| || ||||||||||||||||| Sbjct 31369 TTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTC 31310 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || || || || | ||||| ||||| || ||| Sbjct 31309 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 31250 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| || |||||| Sbjct 31249 AGTGTCTTCACGAAGATTTGCATT 31226 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | ||| || || ||||| || ||||||||||||||||| Sbjct 30064 TTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTC 30005 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | ||||| || || || ||||| ||||| | ||||| ||||| || ||| Sbjct 30004 GCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 29945 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || ||||| Sbjct 29944 AAGGTCTTCACGAAGATTTGCAT 29922 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || | ||| ||||| || || || || |||||||| || ||||| || Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || || ||||| ||||||||||| || ||||| Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| |||||| || || || || || || ||||| |||||||| Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || ||||| || ||||| || || || ||||||||||| || ||| Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| || |||||| Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||| | ||||| || || ||||| || |||||||| ||||||||||| Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || || || ||||| || ||||| |||||||| || ||||| | Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| | | ||| || || || || || ||||||||||||||||| Sbjct 31066 TTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 31007 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || || || || | ||||| ||||| || ||| Sbjct 31006 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 30947 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| || |||||| Sbjct 30946 AGTGTCTTCACGAAGATTTGCATT 30923 >seq153 Length=425603 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || | ||||| || || || | ||||||||||| | | Sbjct 197642 CCTCCACGAAGACGAAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAA 197701 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | || ||||| || || || || || ||||| | || || || | ||| Sbjct 197702 AGAATACGTCCATCTTCAAGCTG----CCTGCGAAGATGAGTCGCTGCTGACCTGGAGGA 197757 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 | || |||||||| || ||||| ||||| || | || || || || || ||| | ||| Sbjct 197758 ACGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACT 197817 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || | ||||| ||||| | ||||| ||||| ||||| ||||| |||| Sbjct 197818 TCCAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATTT 197866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046422061901138