Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq12137 138 2e-27
seq405 138 2e-27
seq2432 132 1e-25
seq1193 125 1e-23
seq153 96.9 7e-15
>seq12137
Length=1209
Score = 138 bits (152), Expect = 2e-27
Identities = 128/161 (80%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 282941 GCCATCC-TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999
||||||| |||| || | |||||||||||||| || ||||| || ||||| || |
Sbjct 671 GCCATCCATCTAAATGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTT 730
Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059
|||||||||||||||| || || ||| | ||||| || || ||||||||||| || | |
Sbjct 731 CCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGG 790
Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|||| ||||| || || | |||||| |||||||||||||||
Sbjct 791 TGATTGTCTTTCCAGTAAGAGTCTTTACGAATATCTGCATT 831
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| |||||||||| ||||| || || ||||| |||||||||||||| || || ||
Sbjct 999 CCTGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCC 1058
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||| ||||| || || |||||||| |||||||| ||||| || || |
Sbjct 1059 TTCACATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGC 1118
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||||||||| ||||||||
Sbjct 1119 GTCTTAACGAAGATCTGCAT 1138
>seq405
Length=308142
Score = 138 bits (152), Expect = 2e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| |||||||||| || |||||||| ||||| ||||||||||| |||||||| ||
Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||| |||||||| |||||||| ||||| ||||||||||| ||||| | |
Sbjct 21304 TTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGAGA 21245
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||| ||||| || ||||||
Sbjct 21244 GTCTTCACGAAGATTTGCATT 21224
>seq2432
Length=89687
Score = 132 bits (146), Expect = 1e-25
Identities = 125/158 (79%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 282943 CATCC-TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
||||| |||| || || || ||||||||||| || || || || ||||| ||||||
Sbjct 8066 CATCCATCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCC 8125
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
|||||||| |||||||| || ||| | ||||| ||||| || || |||||||| || |||
Sbjct 8126 TTGTCTTGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTG 8185
Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || || | ||||||||||| ||||||||
Sbjct 8186 ATTGTCTTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| ||||| || |||||||| || || ||| ||||| ||||| ||||||||||||||
Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| || || | ||||| ||||| || |||||||| || || ||||| ||||| || ||
Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||| |||||||||||||||
Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464
Score = 113 bits (124), Expect = 9e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||||| || || || || ||||| ||||||||||| |||||||| ||
Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||||||||| |||||||| || || |||||||| ||||| || || |
Sbjct 4563 TTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGC 4622
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 4623 GTCTTTACGAAGATCTGCAT 4642
Score = 96.9 bits (106), Expect = 7e-15
Identities = 115/151 (76%), Gaps = 5/151 (3%)
Strand=Plus/Plus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || || |||||||| || ||||| || ||||| || |||||||||||||||
Sbjct 4798 TGCTTACCTGCGAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 4857
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGA-AGCTT--CGA-CTTCGAGAGTGATCGTCTT 283069
|| || || ||| | ||||| || || || ||||| ||| || | || ||||| |||||
Sbjct 4858 TTGGCCTTGACGTTCTCGATTGTATCGGACAGCTTTGCGACCTCCAAGCGTGATTGTCTT 4917
Query 283070 ACCCGTCA-AAGTCTTAACGAATATCTGCAT 283099
|| || | |||||| ||||| ||||||||
Sbjct 4918 TCCAGTGAGGAGTCTTTACGAAGATCTGCAT 4948
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||||| || || ||||| || || || ||||||||||| ||||| |||
Sbjct 8394 CCTGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCT 8453
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||| ||||| || || || || ||||| || || ||||| || || |
Sbjct 8454 TTGACATTCTCGATTGTGTCGGACGCCTCCACCTCGAGGGTAATTGTCTTCCCTGTTAGC 8513
Query 283080 GTCTTAACGAATATCTGCATT 283100
|| |||||||| || ||||||
Sbjct 8514 GTTTTAACGAAGATTTGCATT 8534
>seq1193
Length=173371
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| ||||| ||||| | ||||| ||||| ||||| || |||||||||||||||||
Sbjct 30368 TTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTC 30309
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| ||||| | ||||| ||||| || || || || || || ||||||||||| || |||
Sbjct 30308 GCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGTC 30249
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
|||||||| ||||| || ||||||
Sbjct 30248 AAAGTCTTCACGAAGATTTGCATT 30225
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
||||| ||||| | || || ||||| || || |||||||||||||||||||| ||
Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||||||||| | ||||| ||||| || ||||
Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||| || || |||||||||
Sbjct 29049 GTCTTCACAAAGATCTGCATT 29029
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
||||| ||||| | ||||| ||||| ||||| || ||||||||||||||||| ||
Sbjct 31666 CCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTCGCC 31607
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | ||||| ||||| || ||||| || || | ||||| ||||| || |||||
Sbjct 31606 TTTACATTCTCGATCGTGTCAGATGCTTCAACCTCTAAGGTGATGGTCTTTCCGGTCAAG 31547
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||| ||||| || ||||||
Sbjct 31546 GTCTTCACGAAAATTTGCATT 31526
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || || ||||| | || || ||||| |||||||| |||||||| ||||||||
Sbjct 32333 TTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTC 32274
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||| || | ||||| || || || ||||| ||||| | ||||| ||||| || |||
Sbjct 32273 GCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 32214
Query 283077 AAAGTCTTAACGAATATCTGCAT 283099
|||||||| ||||| || |||||
Sbjct 32213 AAAGTCTTCACGAAGATTTGCAT 32191
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| ||||| ||||| | ||||| ||||| ||||| || |||||||||||||||||
Sbjct 31369 TTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTC 31310
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| || ||| | ||||| ||||| || || || || || | ||||| ||||| || |||
Sbjct 31309 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 31250
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||| ||||| || ||||||
Sbjct 31249 AGTGTCTTCACGAAGATTTGCATT 31226
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| ||||| ||||| | | ||| || || ||||| || |||||||||||||||||
Sbjct 30064 TTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTC 30005
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| ||||| | ||||| || || || ||||| ||||| | ||||| ||||| || |||
Sbjct 30004 GCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 29945
Query 283077 AAAGTCTTAACGAATATCTGCAT 283099
|| ||||| ||||| || |||||
Sbjct 29944 AAGGTCTTCACGAAGATTTGCAT 29922
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|||||||| || | ||| ||||| || || || || |||||||| || ||||| ||
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || || || || ||||| ||||||||||| || |||||
Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || ||||| || |||||
Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| |||||| || || || || || || ||||| ||||||||
Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| || || | || || ||||| || ||||| || || || ||||||||||| || |||
Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||| ||||| || ||||||
Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
||||| ||||| | ||||| || || ||||| || |||||||| |||||||||||
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || ||||| || ||||| |||||||| || ||||| |
Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || ||||| || |||||
Sbjct 27112 GTTTTCACGAAGATTTGCAT 27093
Score = 93.3 bits (102), Expect = 9e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| | | ||| || || || || || |||||||||||||||||
Sbjct 31066 TTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 31007
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| || ||| | ||||| ||||| || || || || || | ||||| ||||| || |||
Sbjct 31006 GCCTTCACGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTC 30947
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||| ||||| || ||||||
Sbjct 30946 AGTGTCTTCACGAAGATTTGCATT 30923
>seq153
Length=425603
Score = 96.9 bits (106), Expect = 7e-15
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || | ||||| || || || | ||||||||||| | |
Sbjct 197642 CCTCCACGAAGACGAAGCACGAAATGTAGAGTCGACTCCTTCTACATGTTGTAGTCGGAA 197701
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| | || ||||| || || || || || ||||| | || || || | |||
Sbjct 197702 AGAATACGTCCATCTTCAAGCTG----CCTGCGAAGATGAGTCGCTGCTGACCTGGAGGA 197757
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
| || |||||||| || ||||| ||||| || | || || || || || ||| | |||
Sbjct 197758 ACGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTCTCAATCGTATCAGAGGCTCCTACT 197817
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
|| | ||||| ||||| | ||||| ||||| ||||| ||||| ||||
Sbjct 197818 TCCAATGTGATGGTCTTCGCAGTCAAGGTCTTTACGAAAATCTGAATTT 197866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046422061901138
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