Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 107 1e-18
seq2432 104 2e-17
seq405 104 2e-17
seq153 95.1 9e-15
seq12137 87.8 1e-12
>seq1193
Length=173371
Score = 107 bits (118), Expect = 1e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| || ||||| |||| ||| |||||||||| ||| | ||||| || ||| |||||
Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409
Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
| ||||| | | || ||||| | || ||||||||| | || |||||||| || ||
Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349
Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||||||||||||
Sbjct 29348 CAGTGTCTTCACGAAGATTTGCAT 29325
Score = 100 bits (110), Expect = 2e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
||||| ||||| | || |||||||| | || | |||||||| ||| ||||| |
Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173
Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317
|||| | | || || || | || ||||||||| | || ||||| ||||||||||||
Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113
Query 44318 GTCTTCACGAAGATTTGCATGATGTGAA 44345
|| |||||||||||||||||| | ||||
Sbjct 27112 GTTTTCACGAAGATTTGCATGCTCTGAA 27085
Score = 100 bits (110), Expect = 2e-16
Identities = 109/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|||||||| || | |||||| ||||||| ||| | |||||||| ||| |||||| |
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703
Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316
|||| |||| | || ||||| | || || ||||| | || ||||||||||| || |
Sbjct 29702 TTCAC-GTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAA 29644
Query 44317 GGTCTTCACGAAGATTTGCATG 44338
|| ||||||||||||||||||
Sbjct 29643 CGTTTTCACGAAGATTTGCATG 29622
Score = 95.1 bits (104), Expect = 9e-15
Identities = 112/149 (75%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTAT 44250
|| ||| || || ||||| | |||||||| |||| ||| | ||||||||| ||| ||
Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278
Query 44251 CTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309
|||| |||| | ||| | || || |||| || ||| || |||| || || ||||| |
Sbjct 32277 CTTC-GCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCC 32219
Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| || | |||||||||||||||||||||
Sbjct 32218 CAGTCAAAGTCTTCACGAAGATTTGCATG 32190
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| ||||| ||||| | | |||||||||| ||| | |||||||| || |||||
Sbjct 30065 CTTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 30006
Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
| ||| | | | || || |||| || ||| || |||| || || ||||| || ||
Sbjct 30005 CGCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGT 29946
Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338
| ||||||||||||||||||||||
Sbjct 29945 CAAGGTCTTCACGAAGATTTGCATG 29921
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| ||||| ||||| | || ||||| |||| || | |||||||| || |||||
Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310
Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
| ||| | | | || ||||||| || || ||||| | || ||||||||||| ||
Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250
Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||||||||||||||||
Sbjct 30249 CAAAGTCTTCACGAAGATTTGCAT 30226
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| || |||||||| | | |||||||||| || | |||||||| || |||||
Sbjct 31067 CTTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 31008
Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312
| ||||| |||| | || ||||| | || || ||||| | || || ||||| || |
Sbjct 31007 CGCCTTCAC-GTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTG 30949
Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||||||||||||||||||
Sbjct 30948 TCAGTGTCTTCACGAAGATTTGCAT 30924
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| ||||| ||||| | || ||||| |||| || | |||||||| || |||||
Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311
Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312
| ||||| |||| | || ||||| | || || ||||| | || || ||||| || |
Sbjct 31310 CGCCTTCAC-GTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTG 31252
Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||||||||||||||||||
Sbjct 31251 TCAGTGTCTTCACGAAGATTTGCAT 31227
>seq2432
Length=89687
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251
||||| || ||||||||||| ||||||||||||| ||| | || ||||| || |||
Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137
Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311
|| ||| | || | |||||||| | || || || |||| || || ||||||||
Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197
Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338
||||| ||||| |||||||| ||||||
Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCATG 8224
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252
|||| ||||| || ||||||||||||||||| | ||| | || || || || ||||
Sbjct 6319 GCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCT 6378
Query 44253 TCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312
| ||| | | | |||||||| | || ||| ||||||| || || ||||| || |
Sbjct 6379 TGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAG 6438
Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337
|||| ||||| ||||| || |||||
Sbjct 6439 TGAGCGTCTTTACGAATATCTGCAT 6463
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|| || ||||||| ||||||||||||| || | || ||||| ||| ||||| |
Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562
Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317
|| | | | || ||||| | | ||||||||||| || || ||||| || |||||
Sbjct 4563 TTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGC 4622
Query 44318 GTCTTCACGAAGATTTGCATG 44338
||||| |||||||| ||||||
Sbjct 4623 GTCTTTACGAAGATCTGCATG 4643
>seq405
Length=308142
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|| |||||||||| ||||| || |||| ||| | || ||||| ||| ||||| |
Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305
Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317
|||| | | || ||||| | || ||| ||||| | || |||||||||||||||||
Sbjct 21304 TTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGAGA 21245
Query 44318 GTCTTCACGAAGATTTGCAT 44337
||||||||||||||||||||
Sbjct 21244 GTCTTCACGAAGATTTGCAT 21225
>seq153
Length=425603
Score = 95.1 bits (104), Expect = 9e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||| || || || ||| || |||||||| || || | || | | | || ||
Sbjct 197883 CACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTC 197942
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||| || |||||||||| | ||| ||||| |||| || | |||||||| |||
Sbjct 197943 GAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 198002
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||||| |||| | || || || | | || ||||| | || ||||||
Sbjct 198003 GATCTTCGCCTTCAC-GTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCT 198061
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || | |||||||||||||| |||||
Sbjct 198062 TTCCGGTCAACGTCTTCACGAAGATCTGCAT 198092
>seq12137
Length=1209
Score = 87.8 bits (96), Expect = 1e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251
|||| |||||||||||||| ||||| ||||||| || | |||||||| || |||
Sbjct 685 TGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 744
Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310
|| || | | |||| | || || |||| | ||| ||||||| || || ||||||||
Sbjct 745 TT-GGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCC 803
Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||||| || |||||
Sbjct 804 AGTAAGAGTCTTTACGAATATCTGCAT 830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359886651554199
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