Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1193 107 1e-18 seq2432 104 2e-17 seq405 104 2e-17 seq153 95.1 9e-15 seq12137 87.8 1e-12 >seq1193 Length=173371 Score = 107 bits (118), Expect = 1e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||| |||| ||| |||||||||| ||| | ||||| || ||| ||||| Sbjct 29468 CTTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTT 29409 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | ||||| | | || ||||| | || ||||||||| | || |||||||| || || Sbjct 29408 CGCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGT 29349 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| Sbjct 29348 CAGTGTCTTCACGAAGATTTGCAT 29325 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| ||||| | || |||||||| | || | |||||||| ||| ||||| | Sbjct 27232 CCGGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 27173 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| | | || || || | || ||||||||| | || ||||| |||||||||||| Sbjct 27172 TTCACATTCTCAATCGTATCAGAGGCTTCCACCTCGAGTGTGATCGTTTTTCCCGTGAGG 27113 Query 44318 GTCTTCACGAAGATTTGCATGATGTGAA 44345 || |||||||||||||||||| | |||| Sbjct 27112 GTTTTCACGAAGATTTGCATGCTCTGAA 27085 Score = 100 bits (110), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||| || | |||||| ||||||| ||| | |||||||| ||| |||||| | Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| |||| | || ||||| | || || ||||| | || ||||||||||| || | Sbjct 29702 TTCAC-GTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAA 29644 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||||||| Sbjct 29643 CGTTTTCACGAAGATTTGCATG 29622 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTAT 44250 || ||| || || ||||| | |||||||| |||| ||| | ||||||||| ||| || Sbjct 32337 CTACTTACCTGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 32278 Query 44251 CTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 |||| |||| | ||| | || || |||| || ||| || |||| || || ||||| | Sbjct 32277 CTTC-GCTTTGACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCC 32219 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | ||||||||||||||||||||| Sbjct 32218 CAGTCAAAGTCTTCACGAAGATTTGCATG 32190 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| ||||| | | |||||||||| ||| | |||||||| || ||||| Sbjct 30065 CTTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 30006 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | ||| | | | || || |||| || ||| || |||| || || ||||| || || Sbjct 30005 CGCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGT 29946 Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||||||||||||||||| Sbjct 29945 CAAGGTCTTCACGAAGATTTGCATG 29921 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| ||||| | || ||||| |||| || | |||||||| || ||||| Sbjct 30369 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 30310 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | ||| | | | || ||||||| || || ||||| | || ||||||||||| || Sbjct 30309 CGCCTTTACATTCTCGATCGTGTCGGAGGCCTCAACCTCTAGGGTGATCGTCTTTCCAGT 30250 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||||||||||||| Sbjct 30249 CAAAGTCTTCACGAAGATTTGCAT 30226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || |||||||| | | |||||||||| || | |||||||| || ||||| Sbjct 31067 CTTACCTGCAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 31008 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 | ||||| |||| | || ||||| | || || ||||| | || || ||||| || | Sbjct 31007 CGCCTTCAC-GTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTG 30949 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||||||||||||||||||| Sbjct 30948 TCAGTGTCTTCACGAAGATTTGCAT 30924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| ||||| | || ||||| |||| || | |||||||| || ||||| Sbjct 31370 CTTACCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 31311 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 | ||||| |||| | || ||||| | || || ||||| | || || ||||| || | Sbjct 31310 CGCCTTCAC-GTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTG 31252 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||||||||||||||||||| Sbjct 31251 TCAGTGTCTTCACGAAGATTTGCAT 31227 >seq2432 Length=89687 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || ||||||||||| ||||||||||||| ||| | || ||||| || ||| Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | || | |||||||| | || || || |||| || || |||||||| Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| |||||||| |||||| Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCATG 8224 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 |||| ||||| || ||||||||||||||||| | ||| | || || || || |||| Sbjct 6319 GCTTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCT 6378 Query 44253 TCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 | ||| | | | |||||||| | || ||| ||||||| || || ||||| || | Sbjct 6379 TGGCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAG 6438 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| ||||| || ||||| Sbjct 6439 TGAGCGTCTTTACGAATATCTGCAT 6463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||||| ||||||||||||| || | || ||||| ||| ||||| | Sbjct 4503 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCC 4562 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | | | || ||||| | | ||||||||||| || || ||||| || ||||| Sbjct 4563 TTGACATTCTCGATAGTGTCTGAAGCTTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGC 4622 Query 44318 GTCTTCACGAAGATTTGCATG 44338 ||||| |||||||| |||||| Sbjct 4623 GTCTTTACGAAGATCTGCATG 4643 >seq405 Length=308142 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||||| ||||| || |||| ||| | || ||||| ||| ||||| | Sbjct 21364 CCTGCAAAGATCAGTCGCTGTTGGTCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCC 21305 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| | | || ||||| | || ||| ||||| | || ||||||||||||||||| Sbjct 21304 TTCACATTCTCGATCGTGTCCGAGGCTTCGACCTCGAGGGTGATCGTCTTTCCCGTGAGA 21245 Query 44318 GTCTTCACGAAGATTTGCAT 44337 |||||||||||||||||||| Sbjct 21244 GTCTTCACGAAGATTTGCAT 21225 >seq153 Length=425603 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| || || || ||| || |||||||| || || | || | | | || || Sbjct 197883 CACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTC 197942 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| || |||||||||| | ||| ||||| |||| || | |||||||| ||| Sbjct 197943 GAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 198002 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| |||| | || || || | | || ||||| | || |||||| Sbjct 198003 GATCTTCGCCTTCAC-GTTCTCGATCGTCTCAGATGCTTGAACCTCTAGGGTGGTCGTCT 198061 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | |||||||||||||| ||||| Sbjct 198062 TTCCGGTCAACGTCTTCACGAAGATCTGCAT 198092 >seq12137 Length=1209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 |||| |||||||||||||| ||||| ||||||| || | |||||||| || ||| Sbjct 685 TGCTCACCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATC 744 Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || || | | |||| | || || |||| | ||| ||||||| || || |||||||| Sbjct 745 TT-GGCCTTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCC 803 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| || ||||| Sbjct 804 AGTAAGAGTCTTTACGAATATCTGCAT 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359886651554199