Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq153 165 2e-35 seq1193 152 1e-31 seq2432 140 8e-28 seq405 131 4e-25 seq12137 107 5e-18 seq362 98.7 2e-15 >seq153 Length=425603 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| |||| |||||| ||||| || || || Sbjct 198089 CAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATCTGAG 198030 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| |||||||| || || ||||||||| Sbjct 198029 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAGCAA 197970 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||| ||||||||||| |||||| |||||| | || |||||| || Sbjct 197969 CGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATAACATC 197910 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || | ||||||||| || Sbjct 197909 CAGAAAGAGTCCATACTGCATCTGGT 197884 >seq1193 Length=173371 Score = 152 bits (168), Expect = 1e-31 Identities = 116/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| ||| || Sbjct 27096 CAAATCTTCGTGAAAACCCTCACGGGAAAAACGATCACACTCGAGGTGGAAGCCTCTGAT 27155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||| |||||||| |||||||| || ||||| |||||| Sbjct 27156 ACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCGGATCAGCAA 27215 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||||||||| Sbjct 27216 CGACTCATCTTCGCCGG 27232 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||| ||||||||||| ||||| || ||| ||| Sbjct 30229 CAAATCTTCGTGAAGACTTTGACTGGAAAGACGATCACCCTAGAGGTTGAGGCCTCCGAC 30288 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| || ||||| ||||| || || || ||||||||| Sbjct 30289 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAA 30348 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| ||||||||||| || Sbjct 30349 CGACTCATCTTCGCCGGTAA 30368 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || ||||| |||||||| |||||||| || ||| ||| Sbjct 29626 CAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTCTGAC 29685 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||||||||||| ||||| |||||||| || || || Sbjct 29686 ACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAACAG 29745 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || ||||| Sbjct 29746 CGTCTCATTTTTGCCGG 29762 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || ||||| || || |||||| | ||||| || ||| ||| Sbjct 31230 CAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTCTGAC 31289 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| || ||||| ||||| || || || ||||||||| Sbjct 31290 ACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAA 31349 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| ||||||||||| || Sbjct 31350 CGACTCATCTTCGCCGGTAA 31369 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || |||||||| || ||||||||| ||| ||| Sbjct 29328 CAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTCTGAC 29387 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| |||||||||||||| |||||||| || |||||| Sbjct 29388 ACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAGCAA 29447 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || || || || || Sbjct 29448 CGTCTGATTTTTGCTGGTAA 29467 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || ||||| || |||||| | ||||| ||| || ||| Sbjct 31530 CAAATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCTTAGAGGTTGAAGCATCTGAC 31589 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| || ||||| ||||| || || || ||||||||| Sbjct 31590 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAA 31649 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||||||||| Sbjct 31650 CGACTCATCTTCGCCGG 31666 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || ||||| || || |||||| | ||||| || ||| ||| Sbjct 30927 CAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTCTGAC 30986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct 30987 ACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 31046 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||| || || || Sbjct 31047 AGACTCATCTTTGCAGGTAA 31066 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || |||||||| || ||||| | || || ||| || ||| Sbjct 29033 CAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATCCGAC 29092 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| || ||||| || || |||||||| |||||||| Sbjct 29093 ACGATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAGCAG 29152 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||||||||| Sbjct 29153 CGACTCATCTTCGCCGG 29169 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || | || || || || ||||| | || || ||| ||| || Sbjct 29925 CAAATCTTCGTGAAGACCTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTCCGAT 29984 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| || ||||| ||||| || ||||| || |||||| Sbjct 29985 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAA 30044 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||||||||| || Sbjct 30045 AGACTTATCTTCGCCGGTAA 30064 >seq2432 Length=89687 Score = 140 bits (154), Expect = 8e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || ||||| || || || |||||||||||||| || ||| Sbjct 8530 CAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTCCGAC 8471 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| |||||||| ||||| |||||||||||||| |||||||| Sbjct 8470 ACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCAGCAG 8411 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 8410 CGACTGATCTTCGCAGG 8394 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || |||||||| || || || ||||||| Sbjct 8220 CAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCAGAC 8161 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||| ||||| || ||||| ||||| || ||||| Sbjct 8160 ACCATCGAAAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCAGCAG 8101 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 ||| | ||||| || || || || Sbjct 8100 CGATTGATCTTTGCGGGTAAGCA 8078 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| ||| ||||||| Sbjct 6460 CAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTCAGAC 6401 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || |||||||| || || ||||| || ||||| Sbjct 6400 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCAGCAG 6341 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || |||||||| || Sbjct 6340 CGTTTGATTTTCGCCGGTAA 6321 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/148 (75%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTC-TCACAGGAAAAACGATCACCCTCG-AGGTGG-AAAGCT-- 177978 || || ||||| || |||| |||| ||||| || ||||| || | |||| | |||||| Sbjct 4945 CAGATCTTCGTAAAGACTCCTCACTGGAAAGACAATCACGCTTGGAGGTCGCAAAGCTGT 4886 Query 177979 CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038 | || || |||||||||||||| ||||| || ||||| ||||| || || || || | Sbjct 4885 CCGATACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATC 4826 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACA 178066 | || ||| | |||||||| || || || Sbjct 4825 AACAGCGATTGATCTTCGCAGGTAAGCA 4798 >seq405 Length=308142 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||| ||| ||| Sbjct 21228 CAAATCTTCGTGAAGACTCTCACGGGAAAGACGATCACCCTCGAGGTCGAAGCCTCGGAC 21287 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || || ||||| ||||| || Sbjct 21288 ACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCAGACCAACAG 21347 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 21348 CGACTGATCTTTGCAGG 21364 >seq12137 Length=1209 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||| || || || || ||||||| Sbjct 1135 CAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCAGAC 1076 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || ||||| ||||| || ||||| ||||| || |||||| Sbjct 1075 ACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAGCAA 1016 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 1015 CGACTGATCTTTGCAGG 999 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || |||||| | ||||| ||| || || Sbjct 827 CAGATATTCGTAAAGACTCTTACTGGAAAGACAATCACCTTGGAGGTCGAAGCTTCCGAT 768 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||| || || || || || || Sbjct 767 ACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAACAG 708 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||| ||||| Sbjct 707 CGATTGATCTTTGCCGG 691 >seq362 Length=320851 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | ||||||||||||||||| ||||| || |||| ||| |||| || ||| ||| Sbjct 3935 CAAGTCTTCGTGAAAACTCTCACCGGAAAGACCGTCACGCTCCAGGTTGAGCCCTCTGAC 3876 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || |||| |||||||||||||| ||||| || || || || || || Sbjct 3875 ACGATTGAAAATGTGAAACTGAAGATTCAGGACAAGGAAGGGATTCCGCCCGATCAACAG 3816 Query 178044 CGACTTATCTTCGCCGG 178060 || || || | ||| || Sbjct 3815 CGCCTCATTTACGCAGG 3799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203366496906518