Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq153 165 2e-35
seq1193 152 1e-31
seq2432 140 8e-28
seq405 131 4e-25
seq12137 107 5e-18
seq362 98.7 2e-15
>seq153
Length=425603
Score = 165 bits (182), Expect = 2e-35
Identities = 160/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || ||||| |||| |||||| ||||| || || ||
Sbjct 198089 CAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATCTGAG 198030
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| |||||||| |||||||| || || |||||||||
Sbjct 198029 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAGCAA 197970
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| |||| ||||||||||| |||||| |||||| | || |||||| ||
Sbjct 197969 CGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATAACATC 197910
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || | ||||||||| ||
Sbjct 197909 CAGAAAGAGTCCATACTGCATCTGGT 197884
>seq1193
Length=173371
Score = 152 bits (168), Expect = 1e-31
Identities = 116/137 (85%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||||||||| ||||| |||||||||||||| |||||||||||| ||| ||
Sbjct 27096 CAAATCTTCGTGAAAACCCTCACGGGAAAAACGATCACACTCGAGGTGGAAGCCTCTGAT 27155
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || |||||| |||||||| |||||||| || ||||| ||||||
Sbjct 27156 ACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCGGATCAGCAA 27215
Query 178044 CGACTTATCTTCGCCGG 178060
||||| |||||||||||
Sbjct 27216 CGACTCATCTTCGCCGG 27232
Score = 127 bits (140), Expect = 5e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| ||| | || ||||| ||||||||||| ||||| || ||| |||
Sbjct 30229 CAAATCTTCGTGAAGACTTTGACTGGAAAGACGATCACCCTAGAGGTTGAGGCCTCCGAC 30288
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| || ||||| ||||| || || || |||||||||
Sbjct 30289 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAA 30348
Query 178044 CGACTTATCTTCGCCGGAAA 178063
||||| ||||||||||| ||
Sbjct 30349 CGACTCATCTTCGCCGGTAA 30368
Score = 122 bits (134), Expect = 2e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||||||||| | || ||||| |||||||| |||||||| || ||| |||
Sbjct 29626 CAAATCTTCGTGAAAACGTTGACCGGAAAGACGATCACACTCGAGGTTGAGGCCTCTGAC 29685
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || |||||||||||||| ||||| |||||||| || || ||
Sbjct 29686 ACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAACAG 29745
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || |||||
Sbjct 29746 CGTCTCATTTTTGCCGG 29762
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || ||||| || || |||||| | ||||| || ||| |||
Sbjct 31230 CAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTCTGAC 31289
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| || ||||| ||||| || || || |||||||||
Sbjct 31290 ACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAA 31349
Query 178044 CGACTTATCTTCGCCGGAAA 178063
||||| ||||||||||| ||
Sbjct 31350 CGACTCATCTTCGCCGGTAA 31369
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || || |||||||| || ||||||||| ||| |||
Sbjct 29328 CAAATCTTCGTGAAGACACTGACCGGCAAGACGATCACACTTGAGGTGGAAGCCTCTGAC 29387
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || ||||| |||||||||||||| |||||||| || ||||||
Sbjct 29388 ACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAGCAA 29447
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| || || || || || ||
Sbjct 29448 CGTCTGATTTTTGCTGGTAA 29467
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || | || ||||| || |||||| | ||||| ||| || |||
Sbjct 31530 CAAATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCTTAGAGGTTGAAGCATCTGAC 31589
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| || ||||| ||||| || || || |||||||||
Sbjct 31590 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAA 31649
Query 178044 CGACTTATCTTCGCCGG 178060
||||| |||||||||||
Sbjct 31650 CGACTCATCTTCGCCGG 31666
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || ||||| || || |||||| | ||||| || ||| |||
Sbjct 30927 CAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTCTGAC 30986
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| || ||||| ||||||||||| || || ||||||
Sbjct 30987 ACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 31046
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|||| ||||| || || ||
Sbjct 31047 AGACTCATCTTTGCAGGTAA 31066
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || |||||||| || ||||| | || || ||| || |||
Sbjct 29033 CAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATCCGAC 29092
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| || ||||| || || |||||||| ||||||||
Sbjct 29093 ACGATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAGCAG 29152
Query 178044 CGACTTATCTTCGCCGG 178060
||||| |||||||||||
Sbjct 29153 CGACTCATCTTCGCCGG 29169
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || | || || || || ||||| | || || ||| ||| ||
Sbjct 29925 CAAATCTTCGTGAAGACCTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTCCGAT 29984
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| || ||||| ||||| || ||||| || ||||||
Sbjct 29985 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAA 30044
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|||||||||||||||| ||
Sbjct 30045 AGACTTATCTTCGCCGGTAA 30064
>seq2432
Length=89687
Score = 140 bits (154), Expect = 8e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| || ||||| || || || |||||||||||||| || |||
Sbjct 8530 CAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTCCGAC 8471
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| |||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 8470 ACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCAGCAG 8411
Query 178044 CGACTTATCTTCGCCGG 178060
||||| |||||||| ||
Sbjct 8410 CGACTGATCTTCGCAGG 8394
Score = 118 bits (130), Expect = 3e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| ||||| || |||||||| || || || |||||||
Sbjct 8220 CAGATCTTCGTTAAGACGCTCACTGGAAAGACAATCACCCTGGAAGTCGAGGCCTCAGAC 8161
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||||||| ||||| || ||||| ||||| || |||||
Sbjct 8160 ACCATCGAAAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCAGATCAGCAG 8101
Query 178044 CGACTTATCTTCGCCGGAAAACA 178066
||| | ||||| || || || ||
Sbjct 8100 CGATTGATCTTTGCGGGTAAGCA 8078
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| ||||| ||| |||||||
Sbjct 6460 CAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTCAGAC 6401
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| ||||| ||||| || |||||||| || || ||||| || |||||
Sbjct 6400 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCAGCAG 6341
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || |||||||| ||
Sbjct 6340 CGTTTGATTTTCGCCGGTAA 6321
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/148 (75%), Gaps = 5/148 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTC-TCACAGGAAAAACGATCACCCTCG-AGGTGG-AAAGCT-- 177978
|| || ||||| || |||| |||| ||||| || ||||| || | |||| | ||||||
Sbjct 4945 CAGATCTTCGTAAAGACTCCTCACTGGAAAGACAATCACGCTTGGAGGTCGCAAAGCTGT 4886
Query 177979 CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038
| || || |||||||||||||| ||||| || ||||| ||||| || || || || |
Sbjct 4885 CCGATACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATC 4826
Query 178039 AGCAACGACTTATCTTCGCCGGAAAACA 178066
| || ||| | |||||||| || || ||
Sbjct 4825 AACAGCGATTGATCTTCGCAGGTAAGCA 4798
>seq405
Length=308142
Score = 131 bits (144), Expect = 4e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| |||||||| ||||| ||||||||||||||||| ||| ||| |||
Sbjct 21228 CAAATCTTCGTGAAGACTCTCACGGGAAAGACGATCACCCTCGAGGTCGAAGCCTCGGAC 21287
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| |||||||| || || || ||||| ||||| ||
Sbjct 21288 ACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCAGACCAACAG 21347
Query 178044 CGACTTATCTTCGCCGG 178060
||||| ||||| || ||
Sbjct 21348 CGACTGATCTTTGCAGG 21364
>seq12137
Length=1209
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| ||||| || ||||| || || || || |||||||
Sbjct 1135 CAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCAGAC 1076
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || || ||||| ||||| || ||||| ||||| || ||||||
Sbjct 1075 ACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAGCAA 1016
Query 178044 CGACTTATCTTCGCCGG 178060
||||| ||||| || ||
Sbjct 1015 CGACTGATCTTTGCAGG 999
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||| || ||||| || |||||| | ||||| ||| || ||
Sbjct 827 CAGATATTCGTAAAGACTCTTACTGGAAAGACAATCACCTTGGAGGTCGAAGCTTCCGAT 768
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||||||||| ||||| || ||||| ||||| || || || || || ||
Sbjct 767 ACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAACAG 708
Query 178044 CGACTTATCTTCGCCGG 178060
||| | ||||| |||||
Sbjct 707 CGATTGATCTTTGCCGG 691
>seq362
Length=320851
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||| | ||||||||||||||||| ||||| || |||| ||| |||| || ||| |||
Sbjct 3935 CAAGTCTTCGTGAAAACTCTCACCGGAAAGACCGTCACGCTCCAGGTTGAGCCCTCTGAC 3876
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || |||| |||||||||||||| ||||| || || || || || ||
Sbjct 3875 ACGATTGAAAATGTGAAACTGAAGATTCAGGACAAGGAAGGGATTCCGCCCGATCAACAG 3816
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || | ||| ||
Sbjct 3815 CGCCTCATTTACGCAGG 3799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203366496906518
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