Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq153 96.9 3e-15
seq1193 95.1 1e-14
>seq153
Length=425603
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 12/230 (5%)
Strand=Plus/Plus
Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698
|| || || || | |||||||||||| || ||| ||||| ||||||||||| || ||
Sbjct 197869 CCACGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGA 197928
Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758
||| | | || |||||||| ||| |||| || || || || || ||||| | ||||
Sbjct 197929 GTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATT 197988
Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCA-----ACGA-CGACACAGTGTCGCTCGACTCC 41812
| ||||||||| ||| || ||||| ||| || | || | ||| ||
Sbjct 197989 CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCA--GATGCTTGA---- 198042
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || |||| || || |||| |||||| ||||| ||||||||
Sbjct 198043 ACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 198092
>seq1193
Length=173371
Score = 95.1 bits (104), Expect = 1e-14
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||||||||| ||| |||||||| ||||||||||| ||
Sbjct 29921 GCCTCCTCGGAGACGAAGCACCAGATGCAGTGTGGATTCCTTCTGGATGTTATAGTCTGA 29862
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724
||| ||||| |||| ||||||||||||||
Sbjct 29861 GAGAGTGCGTCCGTCCTCGAGCTGCTTGCC 29832
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||||||| |||||| |||||||| ||||| ||||| |||
Sbjct 30224 CCTCCACGAAGGCGGAGCACCAGATGTAGCGTGGATTCCTTCTGGATGTTGTAGTCCGAG 30165
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724
|| ||||| |||| ||||||||||||||
Sbjct 30164 AGAGTGCGGCCGTCTTCGAGCTGCTTGCC 30136
Score = 82.4 bits (90), Expect = 7e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||||||| ||||| ||||| || ||||| ||||| ||
Sbjct 29622 GCCTCCTCGGAGACGAAGCACCAGATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCCGA 29563
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724
||| ||||| |||| ||||||||||||||
Sbjct 29562 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 29533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462167348716400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |