Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq153 96.9 3e-15 seq1193 95.1 1e-14 >seq153 Length=425603 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || || || | |||||||||||| || ||| ||||| ||||||||||| || || Sbjct 197869 CCACGAAGCCGAAGCACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGA 197928 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||| | | || |||||||| ||| |||| || || || || || ||||| | |||| Sbjct 197929 GTGTGTCCATCCTCGAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATT 197988 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCA-----ACGA-CGACACAGTGTCGCTCGACTCC 41812 | ||||||||| ||| || ||||| ||| || | || | ||| || Sbjct 197989 CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTCTCA--GATGCTTGA---- 198042 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || |||| || || |||| |||||| ||||| |||||||| Sbjct 198043 ACCTCTAGGGTGGTCGTCTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 198092 >seq1193 Length=173371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||||||||| ||| |||||||| ||||||||||| || Sbjct 29921 GCCTCCTCGGAGACGAAGCACCAGATGCAGTGTGGATTCCTTCTGGATGTTATAGTCTGA 29862 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 ||| ||||| |||| |||||||||||||| Sbjct 29861 GAGAGTGCGTCCGTCCTCGAGCTGCTTGCC 29832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||| |||||| |||||||| ||||| ||||| ||| Sbjct 30224 CCTCCACGAAGGCGGAGCACCAGATGTAGCGTGGATTCCTTCTGGATGTTGTAGTCCGAG 30165 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 || ||||| |||| |||||||||||||| Sbjct 30164 AGAGTGCGGCCGTCTTCGAGCTGCTTGCC 30136 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||||||| ||||| ||||| || ||||| ||||| || Sbjct 29622 GCCTCCTCGGAGACGAAGCACCAGATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCCGA 29563 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 ||| ||||| |||| |||||||||||||| Sbjct 29562 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 29533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462167348716400