Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq30328 87.8 2e-12
>seq30328
Length=6095
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
||| ||||| || | | |||||| || ||||||||| ||||||||||||||||||||
Sbjct 2383 ATCCTTAACGTAAGAGTTAATCAACAGCGAATACATTTCAGAATGAATGTTTTCAATGGC 2442
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || || ||||| | |||||| | || || ||||||
Sbjct 2443 TATTTGGAAACCATAAAAACAGCGAGCCTCTGGAACTTGAACTTCT 2488
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/177 (71%), Gaps = 3/177 (2%)
Strand=Plus/Plus
Query 24170 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 24229
||||||||||||| ||| || ||||||| ||||| || |||||||||||||| ||
Sbjct 2113 AATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTAAGCCAAAAAAT 2172
Query 24230 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289
| ||||| || || |||||||| || || || || ||||| |||| ||||| ||
Sbjct 2173 TGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAACCGCAGCAAATGCAACGAGTCTCTC 2232
Query 24290 TCCATAACCGGCGCTG--TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 24343
|| || ||| | | || ||||| | ||||| ||||||||||||||
Sbjct 2233 CGCAAAAGAAGCGTCGGAACTTGCGATCCAACGAAGGGCCCAGTCGGCCTTCTTTTT 2289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593464013883840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |