Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 116 3e-21
seq10457 100 2e-16
>seq25885
Length=2931
Score = 116 bits (128), Expect = 3e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 20942 CCCGTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATA 21001
||| ||||| || || || | ||| |||| || | ||||||||||| || ||||| ||
Sbjct 761 CCCATTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTA 820
Query 21002 GTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061
||| |||| ||| | ||||||| ||||||||||| || | || || | ||||| ||
Sbjct 821 GTCGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATC 880
Query 21062 CACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGG 21121
| || ||||| |||||||| |||||| ||||| | | | ||||| || |
Sbjct 881 CGGCGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCT 940
Query 21122 CTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| |||| || || || ||||| || || || || || || ||||||||
Sbjct 941 CTCCACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq10457
Length=1107
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | || | ||||| |||||| || | ||||| |||| ||| || |||||
Sbjct 712 AGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTTCGGCCGTCC 653
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||||||||| ||| ||| | || ||| || || |||| | ||| ||||||||
Sbjct 652 TCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTGTCA 593
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
| |||||| | ||||| | ||||| | || | ||| |||| || |||
Sbjct 592 GTGATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGCGTGATGACT 533
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|||||||| || ||||||| || |||||||||
Sbjct 532 TTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422080582774928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |