Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq25885 118 1e-21 seq33636 98.7 1e-15 seq4181 98.7 1e-15 seq26788 95.1 1e-14 seq28651 91.5 2e-13 seq10457 87.8 2e-12 seq30320 86.0 6e-12 >seq25885 Length=2931 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | ||||||||||| ||||| | || || || | | Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| ||| | | | ||| || || | ||||| |||||| | || |||| ||| Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||||||||| || |||| || || | |||||||||| Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| ||||||| || Sbjct 814 ATACAGAAGGAGTCCACGCTCCA 792 >seq33636 Length=8621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| || | | Sbjct 4632 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 4691 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| ||||||||||| ||||||| Sbjct 4692 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4750 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| || ||||||| ||| || Sbjct 4751 GCAGCGCCTCATCTTCGCTGG 4771 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || |||||||||||| |||| ||||| || | | Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| ||||||||||| ||||||| Sbjct 4978 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 5036 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| || || |||| ||| || Sbjct 5037 GCAGCGCCTTATCTTCGCTGG 5057 >seq4181 Length=1006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| || | | Sbjct 458 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 517 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| ||||||||||| ||||||| Sbjct 518 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 576 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| || ||||||| ||| || Sbjct 577 GCAGCGCCTCATCTTCGCTGG 597 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || |||||||||||| |||| ||||| || | | Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| ||||||||||| ||||||| Sbjct 804 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 862 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| || || |||| ||| || Sbjct 863 GCAGCGCCTTATCTTCGCTGG 883 >seq26788 Length=2620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| || | | Sbjct 1825 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 1884 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| ||||||||||| ||||||| Sbjct 1885 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1943 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| || || |||| ||| || Sbjct 1944 GCAGCGCCTTATCTTCGCTGG 1964 >seq28651 Length=4159 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| ||||| || |||||| |||| || || || | Sbjct 1150 AATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1209 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || || | ||||| ||||||||||| ||||||| Sbjct 1210 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1269 Query 40809 GCAACGACTCATCTACGCGGGCAAA 40833 || || ||||||| ||| || ||| Sbjct 1270 ACAGCGTCTCATCTTCGCTGGTAAA 1294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| ||||| || |||||| |||| || || || | Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || || | ||||| ||||||||||| ||||||| Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543 Query 40809 GCAACGACTCATCTACGCGGGCAAA 40833 || || ||||||| ||| || ||| Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAAA 1568 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| ||||| || ||||| |||| || || || | Sbjct 1698 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAG 1757 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || || | ||||| ||||||||||| ||||||| Sbjct 1758 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1817 Query 40809 GCAACGACTCATCTACGCGGGCAAA 40833 || || ||||||| ||| || ||| Sbjct 1818 ACAGCGTCTCATCTTCGCTGGTAAA 1842 >seq10457 Length=1107 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||| | ||||| | || |||||| |||||| | || || || || Sbjct 500 AATGCAAATTTTCATCAAAACTTTGACCGGCAAAGTCATCACGCTGGAGGTGGACAGCAT 559 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| || | | | ||| || || ||||| |||||||| ||||| || || Sbjct 560 GGACAGTGTCGAGAATGTGAAGCGGAAGATCACTGACAAGGAGGGCATTCCCGCTGATCA 619 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | | | || ||||||||||| || |||| || || | |||||| Sbjct 620 TCAGCGATTGGTTTTTGCCGGCAAACAGCTCGAGGACGGCCGAACGTTGGCTGACTACGG 679 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 | |||||||||||||| | || || ||| ||||| | |||||||||| Sbjct 680 TGTGCAGAAGGAGGCCACTGTACACCTTGTGCTGCGCCTACGGGGCGGCGG 730 >seq30320 Length=5461 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || |||||||| | || ||||| || | Sbjct 5379 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACTCTTGAAGTCGAGGCGAGT 5320 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| ||||||||||| ||||||| Sbjct 5319 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 5261 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| || ||||||| ||| || Sbjct 5260 GCAGCGCCTCATCTTCGCTGG 5240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514995672150080