Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 118 1e-21
seq33636 98.7 1e-15
seq4181 98.7 1e-15
seq26788 95.1 1e-14
seq28651 91.5 2e-13
seq10457 87.8 2e-12
seq30320 86.0 6e-12
>seq25885
Length=2931
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | ||||||||||| ||||| | || || || | |
Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| ||| | | | ||| || || | ||||| |||||| | || |||| |||
Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||||||||| || |||| || || | ||||||||||
Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||||||| ||||||| ||
Sbjct 814 ATACAGAAGGAGTCCACGCTCCA 792
>seq33636
Length=8621
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| || | |
Sbjct 4632 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 4691
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || || | ||||| ||||||||||| |||||||
Sbjct 4692 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4750
Query 40809 GCAACGACTCATCTACGCGGG 40829
||| || ||||||| ||| ||
Sbjct 4751 GCAGCGCCTCATCTTCGCTGG 4771
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| || |||||||||||| |||| ||||| || | |
Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || || | ||||| ||||||||||| |||||||
Sbjct 4978 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 5036
Query 40809 GCAACGACTCATCTACGCGGG 40829
||| || || |||| ||| ||
Sbjct 5037 GCAGCGCCTTATCTTCGCTGG 5057
>seq4181
Length=1006
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| || | |
Sbjct 458 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 517
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || || | ||||| ||||||||||| |||||||
Sbjct 518 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 576
Query 40809 GCAACGACTCATCTACGCGGG 40829
||| || ||||||| ||| ||
Sbjct 577 GCAGCGCCTCATCTTCGCTGG 597
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| || |||||||||||| |||| ||||| || | |
Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || || | ||||| ||||||||||| |||||||
Sbjct 804 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 862
Query 40809 GCAACGACTCATCTACGCGGG 40829
||| || || |||| ||| ||
Sbjct 863 GCAGCGCCTTATCTTCGCTGG 883
>seq26788
Length=2620
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| || | |
Sbjct 1825 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 1884
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || || | ||||| ||||||||||| |||||||
Sbjct 1885 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1943
Query 40809 GCAACGACTCATCTACGCGGG 40829
||| || || |||| ||| ||
Sbjct 1944 GCAGCGCCTTATCTTCGCTGG 1964
>seq28651
Length=4159
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| || || || || ||||| ||||| || |||||| |||| || || || |
Sbjct 1150 AATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1209
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | | | |||| || || | ||||| ||||||||||| |||||||
Sbjct 1210 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1269
Query 40809 GCAACGACTCATCTACGCGGGCAAA 40833
|| || ||||||| ||| || |||
Sbjct 1270 ACAGCGTCTCATCTTCGCTGGTAAA 1294
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || ||||| ||||| || |||||| |||| || || || |
Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | | | |||| || || | ||||| ||||||||||| |||||||
Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543
Query 40809 GCAACGACTCATCTACGCGGGCAAA 40833
|| || ||||||| ||| || |||
Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAAA 1568
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || ||||| ||||| || ||||| |||| || || || |
Sbjct 1698 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAG 1757
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | | | |||| || || | ||||| ||||||||||| |||||||
Sbjct 1758 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1817
Query 40809 GCAACGACTCATCTACGCGGGCAAA 40833
|| || ||||||| ||| || |||
Sbjct 1818 ACAGCGTCTCATCTTCGCTGGTAAA 1842
>seq10457
Length=1107
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||| | ||||| | || |||||| |||||| | || || || ||
Sbjct 500 AATGCAAATTTTCATCAAAACTTTGACCGGCAAAGTCATCACGCTGGAGGTGGACAGCAT 559
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| || | | | ||| || || ||||| |||||||| ||||| || ||
Sbjct 560 GGACAGTGTCGAGAATGTGAAGCGGAAGATCACTGACAAGGAGGGCATTCCCGCTGATCA 619
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| ||| | | | || ||||||||||| || |||| || || | ||||||
Sbjct 620 TCAGCGATTGGTTTTTGCCGGCAAACAGCTCGAGGACGGCCGAACGTTGGCTGACTACGG 679
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919
| |||||||||||||| | || || ||| ||||| | ||||||||||
Sbjct 680 TGTGCAGAAGGAGGCCACTGTACACCTTGTGCTGCGCCTACGGGGCGGCGG 730
>seq30320
Length=5461
Score = 86.0 bits (94), Expect = 6e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| || || |||||||| | || ||||| || |
Sbjct 5379 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACTCTTGAAGTCGAGGCGAGT 5320
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || | || || | ||||| ||||||||||| |||||||
Sbjct 5319 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 5261
Query 40809 GCAACGACTCATCTACGCGGG 40829
||| || ||||||| ||| ||
Sbjct 5260 GCAGCGCCTCATCTTCGCTGG 5240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514995672150080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |