Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq25885 136 3e-27 seq28651 98.7 9e-16 seq33636 93.3 4e-14 seq4181 93.3 4e-14 seq10457 91.5 1e-13 seq26788 87.8 2e-12 >seq25885 Length=2931 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||| || || |||||||| || || | ||||||||||||| Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || || ||||||| |||||| ||||| | || | ||||||| Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTTTTG 965 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || ||||| |||||| Sbjct 966 CCCGTCAATGTCTTCACGAAAATTTGCATG 995 >seq28651 Length=4159 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| ||||||||||||| || || || || |||||||||||||| || || Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| || |||| ||| | ||| |||||||| Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| |||||||| Sbjct 1448 GAGAGTCTTCACAAAGATCTGCAT 1425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| ||||||||||||| || || || || |||||||||||||| || || Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| || |||| || | ||| |||||||| Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| |||||||| Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| ||||||||||||| || || || || |||||||||||||| || || Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| || |||| ||| | ||| |||||||| Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| Sbjct 1174 GAGGGTCTTGACAAAGATTTGCAT 1151 >seq33636 Length=8621 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| ||||||| |||||||| || || || |||||||||||||| || || | Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | ||||||||| | ||| | || || ||||| ||| Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652 Query 118719 GTTTTTACAAAAATCTGCATG 118739 ||||| || || || |||||| Sbjct 4651 GTTTTGACGAAGATTTGCATG 4631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| || |||||||| || || || |||||||||||||| || || | Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | |||||| |||| ||| | ||||| ||||| || Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918 >seq4181 Length=1006 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| ||||||| |||||||| || || || |||||||||||||| || || | Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | ||||||||| | ||| | || || ||||| ||| Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478 Query 118719 GTTTTTACAAAAATCTGCATG 118739 ||||| || || || |||||| Sbjct 477 GTTTTGACGAAGATTTGCATG 457 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| || |||||||| || || || |||||||||||||| || || | Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | |||||| |||| ||| | ||||| ||||| || Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 763 GTCTTGACGAAGATCTGCAT 744 >seq10457 Length=1107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 |||||||||||||| || || | | | ||||| ||||| | || |||||||||||| Sbjct 655 TCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTG 596 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || | || || | ||||| ||||| |||| || ||||| | || | Sbjct 595 TCAGTGATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGCGTGATG 536 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| |||||| | ||||| ||||| Sbjct 535 ACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCAT 501 >seq26788 Length=2620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| || |||||||| || || || |||||||||||||| || || | Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | ||||||||| | ||| | || || ||||| ||| Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845 Query 118719 GTTTTTACAAAAATCTGCATG 118739 ||||| || || || |||||| Sbjct 1844 GTTTTGACGAAGATTTGCATG 1824 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| || |||||||| || || || |||||||||||||| || || | Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | ||||||||| | ||| | || || ||||| || Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433646888113936