Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq33636 104 3e-17
seq4181 104 3e-17
seq25885 100 3e-16
seq28651 98.7 1e-15
seq30320 95.1 1e-14
seq26788 95.1 1e-14
seq33887 84.2 2e-11
seq5233 84.2 2e-11
>seq33636
Length=8621
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| || || ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 5059 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5000
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | |||||||||| || || |||| ||||||||||| || || |
Sbjct 4999 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 4940
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
||||||| || ||||| |||||
Sbjct 4939 GCGTCTTGACGAAGATCTGCAT 4918
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| ||||| ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 4773 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 4714
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 4713 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 4654
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
| || || || |||||||||||
Sbjct 4653 GAGTTTTGACGAAGATTTGCAT 4632
>seq4181
Length=1006
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| || || ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 885 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 826
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | |||||||||| || || |||| ||||||||||| || || |
Sbjct 825 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 766
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
||||||| || ||||| |||||
Sbjct 765 GCGTCTTGACGAAGATCTGCAT 744
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| ||||| ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 599 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 540
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 539 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 480
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
| || || || |||||||||||
Sbjct 479 GAGTTTTGACGAAGATTTGCAT 458
>seq25885
Length=2931
Score = 100 bits (110), Expect = 3e-16
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| || | ||| |||||| || || ||||| || |||| || || |||| ||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
||||| || || ||||| || || || ||||| || | ||| |||| ||||||||| |
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151
|| || || | | |||| ||||| |||| ||||| || | ||||| |||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTT 962
Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||||| | ||||| || || ||||||||
Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq28651
Length=4159
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| ||
Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|| | || | | |||||||||| || || |||| ||||| || ||||| ||
Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174
Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184
|| ||||| |||||||||||||||
Sbjct 1173 AGGGTCTTGACAAAGATTTGCATT 1150
Score = 93.3 bits (102), Expect = 5e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| ||
Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|| | || | | |||||||||| || || |||| ||||| || ||||| ||
Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448
Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184
|| ||||| |||||||| ||||||
Sbjct 1447 AGAGTCTTCACAAAGATCTGCATT 1424
Score = 93.3 bits (102), Expect = 5e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| ||
Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|| | || | | |||||||||| || || |||| ||||| || ||||| ||
Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722
Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184
|| ||||| |||||||| ||||||
Sbjct 1721 AGAGTCTTCACAAAGATCTGCATT 1698
>seq30320
Length=5461
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| ||||| ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 5238 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5297
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | ||||| |||| || || || | |||||||| || || || |
Sbjct 5298 CTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGA 5357
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
||||||| || ||||| |||||
Sbjct 5358 GCGTCTTGACGAAGATCTGCAT 5379
>seq26788
Length=2620
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| || || ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 2250 TACCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCG 2191
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 2190 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 2131
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
||||||| || ||||| |||||
Sbjct 2130 GCGTCTTGACGAAGATCTGCAT 2109
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101
|||||||||| || || ||||||||||| | ||| | || |||||||||| ||| ||
Sbjct 1966 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 1907
Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 1906 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 1847
Query 43162 GCGTCTTTACAAAGATTTGCAT 43183
| || || || |||||||||||
Sbjct 1846 GAGTTTTGACGAAGATTTGCAT 1825
>seq33887
Length=10815
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||| |||| |||| ||| ||||||||||||| |||||| | ||||||||||| ||||
Sbjct 5859 AAATATTTCCTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 5918
Query 60117 TCACCACTATACTACC 60132
| ||||||||||||||
Sbjct 5919 TAACCACTATACTACC 5934
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/79 (84%), Gaps = 3/79 (4%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|||||| || ||||| ||| ||||||||||||| |||||| | ||||||||||| |
Sbjct 3614 AAAAATGTTTTCCTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 3555
Query 60114 TACTCACCACTATACTACC 60132
|||| ||||||||||||||
Sbjct 3554 TACTAACCACTATACTACC 3536
>seq5233
Length=1037
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/108 (79%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| |||| ||| ||||||||||||| |||||| | ||||||||||| ||||
Sbjct 675 AAAAATTAACTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 734
Query 60117 TCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTACAAT 60164
| |||||||||||||| ||| | || |||||| ||| ||| |||
Sbjct 735 TAACCACTATACTACCTGGGAAACGAAAT-TAACTT-AATTTTAAAAT 780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571569516934240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |