Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq33636 104 3e-17 seq4181 104 3e-17 seq25885 100 3e-16 seq28651 98.7 1e-15 seq30320 95.1 1e-14 seq26788 95.1 1e-14 seq33887 84.2 2e-11 seq5233 84.2 2e-11 >seq33636 Length=8621 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 5059 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5000 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | |||||||||| || || |||| ||||||||||| || || | Sbjct 4999 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 4940 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| ||||| Sbjct 4939 GCGTCTTGACGAAGATCTGCAT 4918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| ||||| ||||||||||| | ||| | || |||||||||| ||| || Sbjct 4773 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 4714 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 4713 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 4654 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||||||||| Sbjct 4653 GAGTTTTGACGAAGATTTGCAT 4632 >seq4181 Length=1006 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 885 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 826 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | |||||||||| || || |||| ||||||||||| || || | Sbjct 825 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 766 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| ||||| Sbjct 765 GCGTCTTGACGAAGATCTGCAT 744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| ||||| ||||||||||| | ||| | || |||||||||| ||| || Sbjct 599 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 540 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 539 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 480 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||||||||| Sbjct 479 GAGTTTTGACGAAGATTTGCAT 458 >seq25885 Length=2931 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || |||| || || |||| || Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || || ||||| || || || ||||| || | ||| |||| ||||||||| | Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || || | | |||| ||||| |||| ||||| || | ||||| ||| Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTT 962 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| | ||||| || || |||||||| Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq28651 Length=4159 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| || Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | |||||||||| || || |||| ||||| || ||||| || Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174 Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184 || ||||| ||||||||||||||| Sbjct 1173 AGGGTCTTGACAAAGATTTGCATT 1150 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| || Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | |||||||||| || || |||| ||||| || ||||| || Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448 Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184 || ||||| |||||||| |||||| Sbjct 1447 AGAGTCTTCACAAAGATCTGCATT 1424 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| ||||| ||||| ||||| | || | || |||||||||| ||| || Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | |||||||||| || || |||| ||||| || ||||| || Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722 Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184 || ||||| |||||||| |||||| Sbjct 1721 AGAGTCTTCACAAAGATCTGCATT 1698 >seq30320 Length=5461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| ||||| ||||||||||| | ||| | || |||||||||| ||| || Sbjct 5238 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5297 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | ||||| |||| || || || | |||||||| || || || | Sbjct 5298 CTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGA 5357 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| ||||| Sbjct 5358 GCGTCTTGACGAAGATCTGCAT 5379 >seq26788 Length=2620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 2250 TACCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCG 2191 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 2190 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 2131 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| ||||| Sbjct 2130 GCGTCTTGACGAAGATCTGCAT 2109 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||||||||| || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 1966 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 1907 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 1906 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 1847 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||||||||| Sbjct 1846 GAGTTTTGACGAAGATTTGCAT 1825 >seq33887 Length=10815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| ||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 5859 AAATATTTCCTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 5918 Query 60117 TCACCACTATACTACC 60132 | |||||||||||||| Sbjct 5919 TAACCACTATACTACC 5934 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/79 (84%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| || ||||| ||| ||||||||||||| |||||| | ||||||||||| | Sbjct 3614 AAAAATGTTTTCCTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 3555 Query 60114 TACTCACCACTATACTACC 60132 |||| |||||||||||||| Sbjct 3554 TACTAACCACTATACTACC 3536 >seq5233 Length=1037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| ||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 675 AAAAATTAACTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 734 Query 60117 TCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTACAAT 60164 | |||||||||||||| ||| | || |||||| ||| ||| ||| Sbjct 735 TAACCACTATACTACCTGGGAAACGAAAT-TAACTT-AATTTTAAAAT 780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571569516934240