Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq25885 87.8 1e-12 seq28651 82.4 5e-11 >seq25885 Length=2931 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | || |||| ||| | || || ||||||||||||||||||| Sbjct 767 TCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGC 826 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | || |||| || | ||| ||||| ||||| || ||||| ||||| || || Sbjct 827 CAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGG 886 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 |||| ||||||||| ||||| ||| | || | | | | || | || || Sbjct 887 AACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCAC 946 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| |||||||| || | || ||||| || || ||||| Sbjct 947 CTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq28651 Length=4159 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || ||||| ||||| ||||| ||||| || | || ||||||||| ||||| Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | || | || | ||| ||| || || || | ||||| || ||||||||| Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448 Query 34367 AGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||||||||||||||| Sbjct 1447 AGAGTCTTCACAAAGATCTGCAT 1425 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || ||||| ||||| ||||| ||||| || | || ||||||||| ||||| Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | || | || | ||| ||| || || || | ||||| || ||||||||| Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722 Query 34367 AGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||||||||||||||| Sbjct 1721 AGAGTCTTCACAAAGATCTGCAT 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322935339332480