Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 138 9e-28
seq28651 89.7 4e-13
>seq25885
Length=2931
Score = 138 bits (152), Expect = 9e-28
Identities = 159/212 (75%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGT 45185
|||||||| |||||| ||||||||| |||||||||||| || ||| || |||| |
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTT--CGTCCGTCCT 843
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| || ||||| |||||||| |||| ||| || || || || || || |||||||||||
Sbjct 844 CGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTT 903
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
|| || ||| || |||| ||||| | ||||||||||| || ||||| |
Sbjct 904 GGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTTT 963
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||||| |||||||| || |||||||||
Sbjct 964 TGCCCGTCAATGTCTTCACGAAAATTTGCATG 995
>seq28651
Length=4159
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||| || ||||| || | ||||||||||| || || | |||||||||||| || ||
Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | |||| || || | ||| ||||||||||| ||
Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
||||||||||||||||| |||||
Sbjct 1448 GAGAGTCTTCACAAAGATCTGCAT 1425
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||| || ||||| || | ||||||||||| || || | |||||||||||| || ||
Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | |||| || || | ||| ||||||||||| ||
Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| ||||||||||||||
Sbjct 1174 GAGGGTCTTGACAAAGATTTGCAT 1151
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||| || ||||| || | ||||||||||| || || | |||||||||||| || ||
Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | |||| || || | || ||||||||||| ||
Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
||||||||||||||||| |||||
Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394908081708868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |